Sequence Similarity Clusters for the Entities in PDB 1JGV

Entity #1 | Chains: L
Antibody Light Chain protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 41639
95 % 35 148 151 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 39 158 148
70 % 394 2474 1
50 % 806 5011 1
40 % 806 5011 1
30 % 908 5941 1
Entity #2 | Chains: H
Antibody Heavy Chain protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 41862
95 % 2 2 31932
90 % 2 2 30654
70 % 393 2424 2
50 % 807 5011 1
40 % 807 5011 1
30 % 909 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures