Sequence Similarity Clusters for the Entities in PDB 1JGV

Entity #1 | Chains: L
Antibody Light Chain protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 39381
95 % 35 145 146 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 39 155 148
70 % 345 2264 1
50 % 706 4587 1
40 % 706 4587 1
30 % 764 5394 1
Entity #2 | Chains: H
Antibody Heavy Chain protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 39594
95 % 2 2 30261
90 % 2 2 29088
70 % 345 2222 2
50 % 707 4587 1
40 % 707 4587 1
30 % 765 5394 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.