Sequence Similarity Clusters for the Entities in PDB 1JGV

Entity #1 | Chains: L
Antibody Light Chain protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 40457
95 % 35 146 147 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 39 156 148
70 % 362 2362 1
50 % 741 4781 1
40 % 741 4781 1
30 % 804 5635 1
Entity #2 | Chains: H
Antibody Heavy Chain protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 40673
95 % 2 2 31096
90 % 2 2 29870
70 % 361 2311 2
50 % 742 4781 1
40 % 742 4781 1
30 % 805 5635 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures