Sequence Similarity Clusters for the Entities in PDB 1JGV

Entity #1 | Chains: L
Antibody Light Chain protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 41141
95 % 35 148 148 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 39 158 146
70 % 381 2426 1
50 % 779 4913 1
40 % 779 4913 1
30 % 845 5780 1
Entity #2 | Chains: H
Antibody Heavy Chain protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 41361
95 % 2 2 31561
90 % 2 2 30308
70 % 380 2376 2
50 % 780 4913 1
40 % 780 4913 1
30 % 846 5780 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures