Sequence Similarity Clusters for the Entities in PDB 1JGU

Entity #1 | Chains: L
Antibody Light Chain protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 40833
95 % 30 146 149 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 33 156 149
70 % 311 2392 1
50 % 637 4843 1
40 % 637 4843 1
30 % 691 5705 1
Entity #2 | Chains: H
Antibody Heavy Chain protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 41052
95 % 1 2 31362
90 % 1 2 30126
70 % 310 2342 2
50 % 638 4843 1
40 % 638 4843 1
30 % 692 5705 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures