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The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGQ, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY
Sequence Clustering and Redundancy Reduction Results
1JGQ
Sequence Clusters for the Sequence Entities in PDB 1JGQ
Entity #1: Chains: A - 30S 16S ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 198 202 18
95% 199 203 32
90% 199 203 34
70% 199 203 45
50% 241 245 53
40% 242 246 70
30% 242 246 94
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 194 198 20
95% 194 198 36
90% 198 202 35
70% 198 202 46
50% 276 280 36
40% 278 282 46
30% 331 335 44
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 89 90 156
95% 197 198 41
90% 197 198 43
70% 197 198 55
50% 273 274 41
40% 273 274 54
30% 325 326 51
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 195 196 28
95% 196 197 44
90% 196 197 46
70% 196 197 58
50% 279 280 35
40% 279 280 45
30% 330 331 46
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 197 198 24
95% 197 198 40
90% 197 198 42
70% 197 198 54
50% 273 274 42
40% 329 330 35
30% 329 330 47
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 164 165 35
95% 204 205 31
90% 204 205 33
70% 285 286 24
50% 285 286 34
40% 285 286 44
30% 285 286 69
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 198 199 21
95% 198 199 37
90% 198 199 39
70% 198 199 51
50% 278 279 39
40% 278 279 51
30% 330 331 49
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 196 197 25
95% 196 197 45
90% 196 197 47
70% 196 197 59
50% 196 197 92
40% 196 197 114
30% 196 197 137
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 198 201 19
95% 203 206 30
90% 203 206 32
70% 203 206 43
50% 283 287 33
40% 283 287 43
30% 283 287 68
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S16 protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 5 12285
95% 196 198 42
90% 196 198 44
70% 196 198 56
50% 196 198 90
40% 196 198 112
30% 275 277 75
Entity #2: Chains: B,C - tRNA(Phe) rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 80 222
95% 191 192 49
90% 195 196 48
70% 195 196 60
50% 195 196 93
40% 195 196 116
30% 195 196 139
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 48 49 505
95% 173 174 71
90% 173 174 75
70% 173 174 88
50% 173 174 128
40% 173 174 146
30% 173 174 164
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 173 176 45
95% 173 176 67
90% 173 176 70
70% 173 176 83
50% 274 277 38
40% 274 277 48
30% 274 277 72
Entity #23: Chains: W - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 48 49 355
95% 196 197 43
90% 196 197 45
70% 196 197 57
50% 196 197 91
40% 196 197 113
30% 196 197 136
Entity #24: Chains: X - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 187 188 31
95% 187 188 51
90% 187 188 54
70% 187 188 66
50% 187 188 111
40% 187 188 133
30% 187 188 153
Entity #3: Chains: D - tRNA(Phe) rna, length: 74 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: 1 - MESSENGER RNA MF36 rna, length: 36 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 197 198 22
95% 198 199 34
90% 198 199 37
70% 198 199 48
50% 198 199 88
40% 273 274 53
30% 273 274 74
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 172 173 48
95% 172 173 72
90% 172 173 76
70% 172 173 90
50% 212 213 75
40% 212 213 102
30% 212 213 122
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 8 6928
95% 198 199 35
90% 198 199 38
70% 198 199 49
50% 273 274 40
40% 274 275 52
30% 274 275 73
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 197 198 23
95% 197 198 39
90% 197 198 41
70% 197 198 53
50% 274 278 37
40% 274 278 47
30% 276 280 71
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 200 203 17
95% 206 209 29
90% 206 209 31
70% 206 209 42
50% 206 209 80
40% 206 209 106
30% 244 247 87
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.