Sequence Similarity Clusters for the Entities in PDB 1JGQ

Entity #1 | Chains: A
30S 16S ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 255 259 25
95 % 256 260 36
90 % 256 260 41
70 % 256 260 50
50 % 305 309 53
40 % 306 310 66
30 % 306 310 86
Entity #11 | Chains: K
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 251 255 30
95 % 251 255 40
90 % 255 259 42
70 % 255 259 51
50 % 352 356 29
40 % 354 358 39
30 % 430 434 32
Entity #12 | Chains: L
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 91 196
95 % 254 255 44
90 % 254 255 49
70 % 254 255 58
50 % 349 350 36
40 % 349 350 45
30 % 424 425 39
Entity #13 | Chains: M
30S RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 252 253 35
95 % 253 254 48
90 % 253 254 53
70 % 253 254 63
50 % 355 356 28
40 % 355 356 38
30 % 428 429 35
Entity #14 | Chains: N
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 254 255 33
95 % 254 255 43
90 % 254 255 48
70 % 254 255 57
50 % 349 350 35
40 % 429 430 21
30 % 430 431 34
Entity #15 | Chains: O
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 206 207 46
95 % 261 262 35
90 % 261 262 40
70 % 360 361 23
50 % 361 362 27
40 % 361 362 37
30 % 361 362 56
Entity #16 | Chains: P
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 255 256 31
95 % 255 256 41
90 % 255 256 46
70 % 255 256 55
50 % 354 355 32
40 % 354 355 43
30 % 429 430 38
Entity #17 | Chains: Q
30S RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 253 254 34
95 % 253 254 49
90 % 253 254 54
70 % 254 255 60
50 % 254 255 86
40 % 254 255 107
30 % 254 255 119
Entity #18 | Chains: R
30S RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 255 258 27
95 % 260 263 34
90 % 260 263 39
70 % 260 263 48
50 % 359 363 26
40 % 360 364 36
30 % 360 364 55
Entity #19 | Chains: S
30S RIBOSOMAL PROTEIN S16 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 5 14011
95 % 253 255 45
90 % 253 255 50
70 % 253 255 59
50 % 253 255 85
40 % 254 256 106
30 % 351 353 61
Entity #2 | Chains: B,C
tRNA(Phe) rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: T
30S RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 87 224
95 % 248 249 51
90 % 252 253 55
70 % 252 253 64
50 % 252 253 88
40 % 252 253 109
30 % 252 253 122
Entity #21 | Chains: U
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 50 51 608
95 % 219 220 63
90 % 219 220 68
70 % 219 220 78
50 % 219 220 108
40 % 219 220 131
30 % 219 220 142
Entity #22 | Chains: V
30S RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 255 258 26
95 % 255 258 37
90 % 255 258 43
70 % 255 258 52
50 % 350 353 31
40 % 350 353 41
30 % 350 353 58
Entity #23 | Chains: W
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 50 51 372
95 % 253 254 47
90 % 253 254 52
70 % 253 254 62
50 % 253 254 87
40 % 253 254 108
30 % 253 254 120
Entity #24 | Chains: X
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 244 245 38
95 % 244 245 53
90 % 244 245 57
70 % 244 245 68
50 % 244 245 93
40 % 244 245 117
30 % 244 245 131
Entity #3 | Chains: D
tRNA(Phe) rna, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: 1
MESSENGER RNA MF36 rna, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: E
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 254 255 28
95 % 255 256 38
90 % 255 256 44
70 % 255 256 53
50 % 348 349 34
40 % 349 350 44
30 % 349 350 60
Entity #6 | Chains: F
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 218 219 44
95 % 218 219 64
90 % 218 219 69
70 % 218 219 79
50 % 272 273 78
40 % 272 273 99
30 % 272 273 112
Entity #7 | Chains: G
30S RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 8 7953
95 % 255 256 39
90 % 255 256 45
70 % 255 256 54
50 % 349 350 33
40 % 350 351 42
30 % 350 351 59
Entity #8 | Chains: H
30S RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 254 255 32
95 % 254 255 42
90 % 254 255 47
70 % 254 255 56
50 % 350 354 30
40 % 350 354 40
30 % 352 356 57
Entity #9 | Chains: I
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 257 260 24
95 % 263 266 33
90 % 263 266 36
70 % 263 266 45
50 % 263 266 83
40 % 263 266 101
30 % 306 309 77

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.