1JGQ

The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGQ, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY


Sequence Similarity Clusters for the Entities in PDB 1JGQ

Entity #1 | Chains: A
30S 16S ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 271 275 28
95 % 272 276 41
90 % 272 276 46
70 % 272 276 56
50 % 352 356 66
40 % 357 361 84
30 % 357 361 96
Entity #11 | Chains: K
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 267 271 32
95 % 267 271 45
90 % 271 275 47
70 % 271 275 57
50 % 417 421 27
40 % 423 427 37
30 % 538 542 30
Entity #12 | Chains: L
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 91 220
95 % 270 271 50
90 % 270 271 55
70 % 270 271 65
50 % 410 411 35
40 % 410 411 48
30 % 525 526 34
Entity #13 | Chains: M
30S RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 268 269 39
95 % 269 270 53
90 % 269 270 58
70 % 269 270 68
50 % 420 421 26
40 % 420 421 38
30 % 527 528 32
Entity #14 | Chains: N
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 270 271 35
95 % 270 271 49
90 % 270 271 54
70 % 270 271 64
50 % 414 415 32
40 % 536 537 19
30 % 536 537 31
Entity #15 | Chains: O
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 216 217 51
95 % 277 278 39
90 % 277 278 44
70 % 421 422 19
50 % 431 432 24
40 % 431 432 35
30 % 431 432 55
Entity #16 | Chains: P
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 271 272 33
95 % 271 272 46
90 % 271 272 51
70 % 271 272 62
50 % 418 419 31
40 % 418 419 43
30 % 526 527 36
Entity #17 | Chains: Q
30S RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 269 270 36
95 % 269 270 54
90 % 269 270 59
70 % 278 279 54
50 % 278 279 90
40 % 278 279 113
30 % 278 279 123
Entity #18 | Chains: R
30S RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 271 274 30
95 % 276 279 38
90 % 276 279 43
70 % 276 279 53
50 % 424 428 25
40 % 429 433 34
30 % 429 433 54
Entity #19 | Chains: S
30S RIBOSOMAL PROTEIN S16 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 5 15778
95 % 269 271 51
90 % 269 271 56
70 % 269 271 66
50 % 276 278 91
40 % 276 278 114
30 % 411 413 63
Entity #2 | Chains: B,C
tRNA(Phe) rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: T
30S RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 87 258
95 % 264 265 56
90 % 268 269 60
70 % 268 269 69
50 % 268 269 94
40 % 268 269 117
30 % 268 269 128
Entity #21 | Chains: U
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 50 51 719
95 % 235 236 65
90 % 235 236 69
70 % 235 236 81
50 % 235 236 111
40 % 235 236 135
30 % 235 236 144
Entity #22 | Chains: V
30S RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 271 274 29
95 % 271 274 42
90 % 271 274 48
70 % 271 274 58
50 % 418 421 28
40 % 421 424 40
30 % 421 424 57
Entity #23 | Chains: W
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 50 51 524
95 % 269 270 52
90 % 269 270 57
70 % 269 270 67
50 % 269 270 93
40 % 269 270 116
30 % 269 270 127
Entity #24 | Chains: X
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 260 261 43
95 % 260 261 59
90 % 260 261 63
70 % 260 261 74
50 % 260 261 98
40 % 260 261 121
30 % 260 261 133
Entity #3 | Chains: D
tRNA(Phe) rna, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: 1
MESSENGER RNA MF36 rna, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: E
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 270 271 31
95 % 271 272 43
90 % 271 272 49
70 % 271 272 59
50 % 408 409 36
40 % 413 414 45
30 % 413 414 62
Entity #6 | Chains: F
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 234 235 48
95 % 234 235 66
90 % 234 235 70
70 % 234 235 82
50 % 308 309 84
40 % 308 309 103
30 % 308 309 116
Entity #7 | Chains: G
30S RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 8 9009
95 % 271 272 44
90 % 271 272 50
70 % 271 272 60
50 % 415 416 29
40 % 420 421 41
30 % 420 421 58
Entity #8 | Chains: H
30S RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 270 271 34
95 % 270 271 48
90 % 270 271 53
70 % 270 271 63
50 % 413 417 30
40 % 413 417 42
30 % 415 419 60
Entity #9 | Chains: I
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 273 276 27
95 % 279 282 37
90 % 279 282 42
70 % 279 282 51
50 % 279 282 88
40 % 279 282 110
30 % 352 355 95

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.