Sequence Similarity Clusters for the Entities in PDB 1JGQ

Entity #1 | Chains: A
30S 16S ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 239 243 14
95 % 240 244 25
90 % 240 244 29
70 % 240 244 40
50 % 285 289 50
40 % 286 290 62
30 % 286 290 83
Entity #11 | Chains: K
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 235 239 19
95 % 235 239 31
90 % 239 243 30
70 % 239 243 41
50 % 326 330 31
40 % 328 332 41
30 % 397 401 37
Entity #12 | Chains: L
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 90 190
95 % 238 239 35
90 % 238 239 40
70 % 238 239 49
50 % 323 324 39
40 % 323 324 49
30 % 391 392 47
Entity #13 | Chains: M
30S RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 236 237 25
95 % 237 238 38
90 % 237 238 43
70 % 237 238 53
50 % 329 330 30
40 % 329 330 40
30 % 395 396 41
Entity #14 | Chains: N
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 238 239 23
95 % 238 239 34
90 % 238 239 39
70 % 238 239 48
50 % 323 324 38
40 % 396 397 27
30 % 397 398 39
Entity #15 | Chains: O
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 193 194 42
95 % 245 246 22
90 % 245 246 27
70 % 334 335 23
50 % 335 336 29
40 % 335 336 39
30 % 335 336 56
Entity #16 | Chains: P
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 239 240 20
95 % 239 240 32
90 % 239 240 37
70 % 239 240 46
50 % 328 329 35
40 % 328 329 46
30 % 396 397 46
Entity #17 | Chains: Q
30S RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 237 238 24
95 % 237 238 39
90 % 237 238 44
70 % 238 239 51
50 % 238 239 82
40 % 238 239 108
30 % 238 239 124
Entity #18 | Chains: R
30S RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 239 242 16
95 % 244 247 21
90 % 244 247 26
70 % 244 247 37
50 % 333 337 27
40 % 334 338 38
30 % 334 338 54
Entity #19 | Chains: S
30S RIBOSOMAL PROTEIN S16 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 5 13376
95 % 237 239 36
90 % 237 239 41
70 % 237 239 50
50 % 237 239 81
40 % 238 240 106
30 % 325 327 65
Entity #2 | Chains: B,C
tRNA(Phe) rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: T
30S RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 83 84 225
95 % 232 233 40
90 % 236 237 45
70 % 236 237 54
50 % 236 237 87
40 % 236 237 113
30 % 236 237 128
Entity #21 | Chains: U
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 49 566
95 % 204 205 63
90 % 204 205 66
70 % 204 205 75
50 % 204 205 109
40 % 204 205 129
30 % 204 205 145
Entity #22 | Chains: V
30S RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 239 242 15
95 % 239 242 26
90 % 239 242 31
70 % 239 242 42
50 % 324 327 34
40 % 324 327 44
30 % 324 327 60
Entity #23 | Chains: W
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 50 370
95 % 237 238 37
90 % 237 238 42
70 % 237 238 52
50 % 237 238 83
40 % 237 238 110
30 % 237 238 126
Entity #24 | Chains: X
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 228 229 39
95 % 228 229 54
90 % 228 229 58
70 % 228 229 69
50 % 228 229 97
40 % 228 229 118
30 % 228 229 133
Entity #3 | Chains: D
tRNA(Phe) rna, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: 1
MESSENGER RNA MF36 rna, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: E
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 238 239 17
95 % 239 240 27
90 % 239 240 33
70 % 239 240 43
50 % 322 323 37
40 % 323 324 47
30 % 323 324 63
Entity #6 | Chains: F
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 203 204 43
95 % 203 204 64
90 % 203 204 67
70 % 203 204 76
50 % 251 252 68
40 % 251 252 93
30 % 251 252 110
Entity #7 | Chains: G
30S RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 8 7599
95 % 239 240 28
90 % 239 240 34
70 % 239 240 44
50 % 323 324 36
40 % 324 325 45
30 % 324 325 62
Entity #8 | Chains: H
30S RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 238 239 22
95 % 238 239 33
90 % 238 239 38
70 % 238 239 47
50 % 324 328 33
40 % 324 328 43
30 % 326 330 59
Entity #9 | Chains: I
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 241 244 13
95 % 247 250 20
90 % 247 250 25
70 % 247 250 35
50 % 247 250 70
40 % 247 250 94
30 % 286 289 80

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.