POP-OUT | CLOSE

An Information Portal to 110071 Biological Macromolecular Structures

The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGQ, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY
Sequence Clustering and Redundancy Reduction Results
1JGQ
Sequence Clusters for the Sequence Entities in PDB 1JGQ
Entity #1: Chains: A - 30S 16S ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 220 224 26
95% 221 225 38
90% 221 225 42
70% 221 225 52
50% 264 268 50
40% 265 269 60
30% 265 269 80
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 216 220 31
95% 216 220 43
90% 220 224 43
70% 220 224 53
50% 302 306 33
40% 304 308 43
30% 360 364 40
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 89 90 166
95% 219 220 47
90% 219 220 51
70% 219 220 61
50% 299 300 43
40% 299 300 52
30% 354 355 48
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 217 218 36
95% 218 219 50
90% 218 219 54
70% 218 219 65
50% 305 306 31
40% 305 306 42
30% 358 359 42
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 219 220 34
95% 219 220 46
90% 219 220 50
70% 219 220 60
50% 299 300 42
40% 359 360 31
30% 360 361 41
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 182 183 46
95% 226 227 27
90% 226 227 32
70% 310 311 21
50% 311 312 30
40% 311 312 41
30% 311 312 56
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 220 221 32
95% 220 221 44
90% 220 221 48
70% 220 221 58
50% 304 305 38
40% 304 305 50
30% 359 360 47
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 218 219 35
95% 218 219 51
90% 218 219 55
70% 219 220 63
50% 219 220 92
40% 219 220 113
30% 219 220 126
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 220 223 28
95% 225 228 25
90% 225 228 29
70% 225 228 41
50% 309 313 28
40% 310 314 39
30% 310 314 55
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S16 protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 5 12569
95% 218 220 48
90% 218 220 52
70% 218 220 62
50% 218 220 91
40% 219 221 112
30% 301 303 69
Entity #2: Chains: B,C - tRNA(Phe) rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 80 223
95% 213 214 56
90% 217 218 57
70% 217 218 67
50% 217 218 94
40% 217 218 116
30% 217 218 128
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 48 49 517
95% 193 194 64
90% 193 194 66
70% 193 194 78
50% 193 194 111
40% 193 194 129
30% 193 194 148
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 220 223 27
95% 220 223 40
90% 220 223 45
70% 220 223 55
50% 300 303 35
40% 300 303 47
30% 300 303 65
Entity #23: Chains: W - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 48 49 367
95% 218 219 49
90% 218 219 53
70% 218 219 64
50% 218 219 93
40% 218 219 114
30% 218 219 127
Entity #24: Chains: X - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 209 210 39
95% 209 210 59
90% 209 210 62
70% 209 210 72
50% 209 210 98
40% 209 210 120
30% 209 210 133
Entity #3: Chains: D - tRNA(Phe) rna, length: 74 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: 1 - MESSENGER RNA MF36 rna, length: 36 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 219 220 30
95% 220 221 41
90% 220 221 46
70% 220 221 56
50% 298 299 41
40% 299 300 51
30% 299 300 68
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 192 193 45
95% 192 193 65
90% 192 193 67
70% 192 193 79
50% 235 236 78
40% 235 236 99
30% 235 236 119
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 8 7119
95% 220 221 42
90% 220 221 47
70% 220 221 57
50% 299 300 39
40% 300 301 49
30% 300 301 67
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 219 220 33
95% 219 220 45
90% 219 220 49
70% 219 220 59
50% 300 304 34
40% 300 304 46
30% 302 306 64
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 222 225 24
95% 228 231 23
90% 228 231 28
70% 228 231 39
50% 228 231 82
40% 228 231 104
30% 267 270 77
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.