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The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGQ, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY
Sequence Clustering and Redundancy Reduction Results
1JGQ
Sequence Clusters for the Sequence Entities in PDB 1JGQ
Entity #1: Chains: A - 30S 16S ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 189 193 19
95% 190 194 36
90% 190 194 38
70% 190 194 49
50% 230 234 56
40% 231 235 74
30% 231 235 96
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 185 189 21
95% 185 189 40
90% 189 193 39
70% 189 193 51
50% 265 269 35
40% 267 271 47
30% 317 321 43
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 87 155
95% 188 189 44
90% 188 189 47
70% 188 189 57
50% 262 263 40
40% 262 263 54
30% 311 312 53
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 186 187 27
95% 187 188 47
90% 187 188 50
70% 187 188 60
50% 268 269 34
40% 268 269 46
30% 273 274 65
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 188 189 25
95% 188 189 43
90% 188 189 46
70% 188 189 56
50% 262 263 41
40% 315 316 35
30% 315 316 44
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 157 158 35
95% 195 196 35
90% 195 196 37
70% 274 275 24
50% 274 275 33
40% 274 275 45
30% 274 275 68
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 189 190 22
95% 189 190 41
90% 189 190 44
70% 189 190 54
50% 267 268 38
40% 267 268 51
30% 316 317 50
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 187 188 26
95% 187 188 48
90% 187 188 51
70% 187 188 61
50% 187 188 94
40% 187 188 119
30% 187 188 142
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 189 192 20
95% 194 197 33
90% 194 197 35
70% 194 197 47
50% 272 276 32
40% 272 276 43
30% 272 276 67
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S16 protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 5 11931
95% 187 189 45
90% 187 189 48
70% 187 189 58
50% 187 189 92
40% 187 189 117
30% 264 266 76
Entity #2: Chains: B,C - tRNA(Phe) rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 78 79 221
95% 182 183 49
90% 186 187 52
70% 186 187 62
50% 186 187 95
40% 186 187 120
30% 186 187 143
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 48 49 492
95% 167 168 61
90% 167 168 64
70% 167 168 80
50% 167 168 117
40% 167 168 139
30% 167 168 161
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 167 170 37
95% 167 170 59
90% 167 170 63
70% 167 170 78
50% 263 266 37
40% 263 266 49
30% 263 266 72
Entity #23: Chains: W - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 48 365
95% 187 188 46
90% 187 188 49
70% 187 188 59
50% 187 188 93
40% 187 188 118
30% 187 188 141
Entity #24: Chains: X - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 178 179 34
95% 178 179 53
90% 178 179 55
70% 178 179 68
50% 178 179 105
40% 178 179 132
30% 178 179 151
Entity #3: Chains: D - tRNA(Phe) rna, length: 74 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: 1 - MESSENGER RNA MF36 rna, length: 36 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 188 189 23
95% 189 190 38
90% 189 190 42
70% 189 190 52
50% 189 190 91
40% 262 263 53
30% 262 263 75
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 165 166 38
95% 165 166 63
90% 165 166 66
70% 165 166 82
50% 205 206 75
40% 205 206 100
30% 205 206 120
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 8 6712
95% 189 190 39
90% 189 190 43
70% 189 190 53
50% 262 263 39
40% 263 264 52
30% 263 264 74
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 188 189 24
95% 188 189 42
90% 188 189 45
70% 188 189 55
50% 263 267 36
40% 263 267 48
30% 265 269 71
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 191 194 18
95% 197 200 29
90% 197 200 30
70% 197 200 44
50% 197 200 86
40% 197 200 108
30% 233 236 94
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.