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The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGQ, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY
Sequence Clustering and Redundancy Reduction Results
1JGQ
Sequence Clusters for the Sequence Entities in PDB 1JGQ
Entity #1: Chains: A - 30S 16S ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 219 223 27
95% 220 224 40
90% 220 224 44
70% 220 224 54
50% 263 267 51
40% 264 268 64
30% 264 268 83
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 215 219 31
95% 215 219 44
90% 219 223 45
70% 219 223 55
50% 302 306 35
40% 304 308 43
30% 369 373 37
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 88 89 181
95% 218 219 48
90% 218 219 52
70% 218 219 62
50% 299 300 43
40% 299 300 52
30% 363 364 46
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 216 217 36
95% 217 218 51
90% 217 218 55
70% 217 218 66
50% 305 306 31
40% 305 306 42
30% 367 368 40
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 218 219 34
95% 218 219 47
90% 218 219 51
70% 218 219 61
50% 299 300 42
40% 368 369 30
30% 369 370 38
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 181 182 46
95% 225 226 39
90% 225 226 43
70% 310 311 22
50% 311 312 30
40% 311 312 41
30% 311 312 57
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 219 220 32
95% 219 220 45
90% 219 220 49
70% 219 220 59
50% 304 305 39
40% 304 305 50
30% 368 369 44
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 217 218 35
95% 217 218 52
90% 217 218 56
70% 218 219 64
50% 218 219 92
40% 218 219 114
30% 218 219 128
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 219 222 29
95% 224 227 36
90% 224 227 40
70% 224 227 52
50% 309 313 29
40% 310 314 39
30% 310 314 54
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S16 protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 5 12851
95% 217 219 49
90% 217 219 53
70% 217 219 63
50% 217 219 91
40% 218 220 113
30% 301 303 70
Entity #2: Chains: B,C - tRNA(Phe) rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 80 226
95% 212 213 56
90% 216 217 58
70% 216 217 69
50% 216 217 94
40% 216 217 116
30% 216 217 130
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 48 49 532
95% 193 194 64
90% 193 194 67
70% 193 194 79
50% 193 194 113
40% 193 194 131
30% 193 194 150
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 219 222 28
95% 219 222 41
90% 219 222 46
70% 219 222 56
50% 300 303 38
40% 300 303 48
30% 300 303 67
Entity #23: Chains: W - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 48 49 371
95% 217 218 50
90% 217 218 54
70% 217 218 65
50% 217 218 93
40% 217 218 115
30% 217 218 129
Entity #24: Chains: X - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 208 209 40
95% 208 209 59
90% 208 209 62
70% 208 209 73
50% 208 209 100
40% 208 209 123
30% 208 209 135
Entity #3: Chains: D - tRNA(Phe) rna, length: 74 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: 1 - MESSENGER RNA MF36 rna, length: 36 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 218 219 30
95% 219 220 42
90% 219 220 47
70% 219 220 57
50% 298 299 41
40% 299 300 51
30% 299 300 69
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 192 193 45
95% 192 193 65
90% 192 193 68
70% 192 193 80
50% 236 237 77
40% 236 237 102
30% 236 237 121
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 8 7269
95% 219 220 43
90% 219 220 48
70% 219 220 58
50% 299 300 40
40% 300 301 49
30% 300 301 68
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 218 219 33
95% 218 219 46
90% 218 219 50
70% 218 219 60
50% 300 304 37
40% 300 304 47
30% 302 306 63
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 221 224 25
95% 227 230 24
90% 227 230 29
70% 227 230 41
50% 227 230 83
40% 227 230 108
30% 266 269 80
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.