1JGQ

The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGQ, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY


Sequence Similarity Clusters for the Entities in PDB 1JGQ

Entity #1 | Chains: A
30S 16S ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 269 273 27
95 % 270 274 38
90 % 270 274 42
70 % 270 274 52
50 % 332 336 65
40 % 335 339 76
30 % 335 339 91
Entity #11 | Chains: K
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 265 269 32
95 % 265 269 43
90 % 269 273 43
70 % 269 273 53
50 % 391 395 26
40 % 395 399 35
30 % 500 504 28
Entity #12 | Chains: L
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 91 204
95 % 268 269 48
90 % 268 269 51
70 % 268 269 61
50 % 388 389 35
40 % 388 389 45
30 % 491 492 34
Entity #13 | Chains: M
30S RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 266 267 37
95 % 267 268 51
90 % 267 268 54
70 % 267 268 65
50 % 394 395 25
40 % 394 395 37
30 % 493 494 30
Entity #14 | Chains: N
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 268 269 35
95 % 268 269 47
90 % 268 269 50
70 % 268 269 60
50 % 388 389 34
40 % 490 491 18
30 % 490 491 31
Entity #15 | Chains: O
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 216 217 48
95 % 275 276 36
90 % 275 276 40
70 % 401 402 20
50 % 406 407 23
40 % 406 407 33
30 % 406 407 54
Entity #16 | Chains: P
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 269 270 33
95 % 269 270 44
90 % 269 270 48
70 % 269 270 57
50 % 393 394 31
40 % 393 394 43
30 % 494 495 33
Entity #17 | Chains: Q
30S RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 267 268 36
95 % 267 268 52
90 % 267 268 55
70 % 269 270 58
50 % 269 270 87
40 % 269 270 108
30 % 269 270 120
Entity #18 | Chains: R
30S RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 269 272 29
95 % 274 277 35
90 % 274 277 39
70 % 274 277 50
50 % 398 402 24
40 % 401 405 34
30 % 401 405 55
Entity #19 | Chains: S
30S RIBOSOMAL PROTEIN S16 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 5 14889
95 % 267 269 49
90 % 267 269 52
70 % 267 269 62
50 % 269 271 86
40 % 269 271 106
30 % 388 390 63
Entity #2 | Chains: B,C
tRNA(Phe) rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: T
30S RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 87 235
95 % 262 263 53
90 % 266 267 56
70 % 266 267 66
50 % 266 267 90
40 % 266 267 111
30 % 266 267 123
Entity #21 | Chains: U
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 50 51 666
95 % 233 234 62
90 % 233 234 66
70 % 233 234 77
50 % 233 234 103
40 % 233 234 129
30 % 233 234 140
Entity #22 | Chains: V
30S RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 269 272 28
95 % 269 272 40
90 % 269 272 45
70 % 269 272 54
50 % 391 394 28
40 % 394 397 39
30 % 394 397 56
Entity #23 | Chains: W
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 50 51 465
95 % 267 268 50
90 % 267 268 53
70 % 267 268 64
50 % 267 268 89
40 % 267 268 110
30 % 267 268 122
Entity #24 | Chains: X
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 258 259 42
95 % 258 259 56
90 % 258 259 60
70 % 258 259 69
50 % 258 259 94
40 % 258 259 116
30 % 258 259 129
Entity #3 | Chains: D
tRNA(Phe) rna, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: 1
MESSENGER RNA MF36 rna, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: E
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 268 269 31
95 % 269 270 41
90 % 269 270 46
70 % 269 270 55
50 % 387 388 33
40 % 390 391 42
30 % 390 391 61
Entity #6 | Chains: F
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 232 233 45
95 % 232 233 63
90 % 232 233 67
70 % 232 233 78
50 % 301 302 80
40 % 301 302 97
30 % 301 302 113
Entity #7 | Chains: G
30S RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 8 8500
95 % 269 270 42
90 % 269 270 47
70 % 269 270 56
50 % 389 390 30
40 % 392 393 40
30 % 392 393 59
Entity #8 | Chains: H
30S RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 268 269 34
95 % 268 269 46
90 % 268 269 49
70 % 268 269 59
50 % 390 394 29
40 % 390 394 41
30 % 392 396 58
Entity #9 | Chains: I
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 271 274 26
95 % 277 280 33
90 % 277 280 38
70 % 277 280 49
50 % 277 280 84
40 % 277 280 103
30 % 331 334 88

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.