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The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGQ, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY
Sequence Clustering and Redundancy Reduction Results
1JGQ
Sequence Clusters for the Sequence Entities in PDB 1JGQ
Entity #1: Chains: A - 30S 16S ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 255 259 20
95% 256 260 37
90% 256 260 39
70% 256 260 50
50% 304 308 57
40% 305 309 73
30% 305 309 97
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 251 255 23
95% 251 255 41
90% 255 259 40
70% 255 259 52
50% 365 369 36
40% 367 371 48
30% 404 408 50
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 113 133
95% 254 255 45
90% 254 255 48
70% 254 255 60
50% 362 363 41
40% 362 363 56
30% 398 399 58
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 251 252 29
95% 253 254 48
90% 253 254 51
70% 253 254 63
50% 368 369 34
40% 368 369 47
30% 373 374 66
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 254 255 27
95% 254 255 44
90% 254 255 47
70% 254 255 59
50% 362 363 42
40% 402 403 39
30% 402 403 53
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 223 224 37
95% 261 262 36
90% 261 262 38
70% 374 375 24
50% 374 375 33
40% 374 375 46
30% 374 375 71
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 255 256 24
95% 255 256 42
90% 255 256 45
70% 255 256 57
50% 364 365 39
40% 364 365 53
30% 400 401 55
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 253 254 28
95% 253 254 49
90% 253 254 52
70% 253 254 64
50% 253 254 97
40% 253 254 122
30% 253 254 144
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 255 258 21
95% 260 263 35
90% 260 263 37
70% 260 263 48
50% 372 376 32
40% 372 376 44
30% 372 376 69
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S16 protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 5 11577
95% 253 255 46
90% 253 255 49
70% 253 255 61
50% 253 255 95
40% 253 255 120
30% 361 363 78
Entity #2: Chains: B,C - tRNA(Phe) rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 92 218
95% 248 249 51
90% 252 253 53
70% 252 253 65
50% 252 253 98
40% 252 253 124
30% 252 253 146
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 48 49 460
95% 220 221 64
90% 220 221 68
70% 220 221 81
50% 220 221 116
40% 220 221 144
30% 220 221 166
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 220 223 38
95% 220 223 63
90% 220 223 67
70% 220 223 80
50% 363 366 38
40% 363 366 52
30% 363 366 74
Entity #23: Chains: W - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 61 356
95% 253 254 47
90% 253 254 50
70% 253 254 62
50% 253 254 96
40% 253 254 121
30% 253 254 143
Entity #24: Chains: X - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 237 238 34
95% 237 238 55
90% 237 238 59
70% 237 238 71
50% 237 238 110
40% 237 238 133
30% 237 238 153
Entity #3: Chains: D - tRNA(Phe) rna, length: 74 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: 1 - MESSENGER RNA MF36 rna, length: 36 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 254 255 25
95% 255 256 39
90% 255 256 43
70% 255 256 55
50% 255 256 94
40% 362 363 55
30% 362 363 77
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 218 219 39
95% 218 219 66
90% 218 219 70
70% 218 219 83
50% 281 282 81
40% 281 282 101
30% 281 282 123
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 8 6500
95% 255 256 40
90% 255 256 44
70% 255 256 56
50% 362 363 40
40% 363 364 54
30% 363 364 75
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 254 255 26
95% 254 255 43
90% 254 255 46
70% 254 255 58
50% 363 367 37
40% 363 367 51
30% 365 369 72
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 257 260 18
95% 263 266 34
90% 263 266 36
70% 263 266 47
50% 263 266 88
40% 263 266 110
30% 310 313 94
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.