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An Information Portal to 110790 Biological Macromolecular Structures

The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGQ, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY
Sequence Clustering and Redundancy Reduction Results
1JGQ
Sequence Clusters for the Sequence Entities in PDB 1JGQ
Entity #1: Chains: A - 30S 16S ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 220 224 26
95% 221 225 40
90% 221 225 44
70% 221 225 55
50% 264 268 51
40% 265 269 62
30% 265 269 81
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 216 220 31
95% 216 220 44
90% 220 224 45
70% 220 224 56
50% 302 306 34
40% 304 308 44
30% 361 365 40
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 89 90 167
95% 219 220 48
90% 219 220 52
70% 219 220 63
50% 299 300 43
40% 299 300 52
30% 355 356 48
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 217 218 36
95% 218 219 51
90% 218 219 55
70% 218 219 67
50% 305 306 33
40% 305 306 43
30% 359 360 42
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 219 220 34
95% 219 220 47
90% 219 220 51
70% 219 220 62
50% 299 300 42
40% 360 361 30
30% 361 362 41
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 182 183 46
95% 226 227 38
90% 226 227 42
70% 310 311 23
50% 311 312 32
40% 311 312 42
30% 311 312 57
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 220 221 32
95% 220 221 45
90% 220 221 49
70% 220 221 60
50% 304 305 38
40% 304 305 50
30% 360 361 47
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 218 219 35
95% 218 219 52
90% 218 219 56
70% 219 220 65
50% 219 220 92
40% 219 220 113
30% 219 220 126
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 220 223 29
95% 225 228 26
90% 225 228 31
70% 225 228 43
50% 309 313 29
40% 310 314 40
30% 310 314 55
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S16 protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 5 12688
95% 218 220 49
90% 218 220 53
70% 218 220 64
50% 218 220 91
40% 219 221 112
30% 301 303 70
Entity #2: Chains: B,C - tRNA(Phe) rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 80 224
95% 213 214 56
90% 217 218 58
70% 217 218 69
50% 217 218 94
40% 217 218 116
30% 217 218 128
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 48 49 525
95% 193 194 64
90% 193 194 66
70% 193 194 79
50% 193 194 111
40% 193 194 130
30% 193 194 150
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 220 223 27
95% 220 223 41
90% 220 223 46
70% 220 223 57
50% 300 303 37
40% 300 303 48
30% 300 303 67
Entity #23: Chains: W - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 48 49 367
95% 218 219 50
90% 218 219 54
70% 218 219 66
50% 218 219 93
40% 218 219 114
30% 218 219 127
Entity #24: Chains: X - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 209 210 40
95% 209 210 59
90% 209 210 62
70% 209 210 73
50% 209 210 98
40% 209 210 120
30% 209 210 133
Entity #3: Chains: D - tRNA(Phe) rna, length: 74 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: 1 - MESSENGER RNA MF36 rna, length: 36 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 219 220 30
95% 220 221 42
90% 220 221 47
70% 220 221 58
50% 298 299 41
40% 299 300 51
30% 299 300 69
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 192 193 45
95% 192 193 65
90% 192 193 67
70% 192 193 80
50% 235 236 78
40% 235 236 99
30% 235 236 119
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 8 7187
95% 220 221 43
90% 220 221 48
70% 220 221 59
50% 299 300 39
40% 300 301 49
30% 300 301 68
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 219 220 33
95% 219 220 46
90% 219 220 50
70% 219 220 61
50% 300 304 36
40% 300 304 47
30% 302 306 65
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 222 225 24
95% 228 231 24
90% 228 231 29
70% 228 231 41
50% 228 231 83
40% 228 231 105
30% 267 270 79
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.