1JGQ

The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGQ, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY


Sequence Similarity Clusters for the Entities in PDB 1JGQ

Entity #1 | Chains: A
30S 16S ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 256 260 26
95 % 257 261 37
90 % 257 261 42
70 % 257 261 51
50 % 309 313 54
40 % 310 314 68
30 % 310 314 89
Entity #11 | Chains: K
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 252 256 31
95 % 252 256 42
90 % 256 260 43
70 % 256 260 52
50 % 358 362 29
40 % 360 364 39
30 % 439 443 33
Entity #12 | Chains: L
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 91 198
95 % 255 256 46
90 % 255 256 51
70 % 255 256 60
50 % 355 356 36
40 % 355 356 46
30 % 432 433 40
Entity #13 | Chains: M
30S RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 253 254 36
95 % 254 255 49
90 % 254 255 54
70 % 254 255 64
50 % 361 362 28
40 % 361 362 38
30 % 435 436 36
Entity #14 | Chains: N
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 255 256 34
95 % 255 256 45
90 % 255 256 50
70 % 255 256 59
50 % 355 356 35
40 % 437 438 20
30 % 438 439 34
Entity #15 | Chains: O
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 207 208 46
95 % 262 263 36
90 % 262 263 41
70 % 366 367 22
50 % 367 368 27
40 % 367 368 37
30 % 367 368 57
Entity #16 | Chains: P
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 256 257 32
95 % 256 257 43
90 % 256 257 48
70 % 256 257 57
50 % 360 361 32
40 % 360 361 43
30 % 436 437 39
Entity #17 | Chains: Q
30S RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 254 255 35
95 % 254 255 50
90 % 254 255 55
70 % 255 256 62
50 % 255 256 88
40 % 255 256 108
30 % 255 256 120
Entity #18 | Chains: R
30S RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 256 259 29
95 % 261 264 35
90 % 261 264 40
70 % 261 264 50
50 % 365 369 26
40 % 366 370 36
30 % 366 370 56
Entity #19 | Chains: S
30S RIBOSOMAL PROTEIN S16 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 5 14270
95 % 254 256 47
90 % 254 256 52
70 % 254 256 61
50 % 254 256 87
40 % 255 257 107
30 % 357 359 63
Entity #2 | Chains: B,C
tRNA(Phe) rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: T
30S RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 87 225
95 % 249 250 51
90 % 253 254 56
70 % 253 254 66
50 % 253 254 90
40 % 253 254 111
30 % 253 254 123
Entity #21 | Chains: U
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 50 51 616
95 % 220 221 64
90 % 220 221 69
70 % 220 221 79
50 % 220 221 111
40 % 220 221 132
30 % 220 221 143
Entity #22 | Chains: V
30S RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 256 259 27
95 % 256 259 38
90 % 256 259 44
70 % 256 259 53
50 % 356 359 31
40 % 356 359 41
30 % 356 359 59
Entity #23 | Chains: W
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 50 51 384
95 % 254 255 48
90 % 254 255 53
70 % 254 255 63
50 % 254 255 89
40 % 254 255 110
30 % 254 255 122
Entity #24 | Chains: X
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 245 246 39
95 % 245 246 54
90 % 245 246 59
70 % 245 246 69
50 % 245 246 95
40 % 245 246 118
30 % 245 246 131
Entity #3 | Chains: D
tRNA(Phe) rna, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: 1
MESSENGER RNA MF36 rna, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: E
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 255 256 30
95 % 256 257 39
90 % 256 257 45
70 % 256 257 54
50 % 354 355 34
40 % 355 356 44
30 % 355 356 62
Entity #6 | Chains: F
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 219 220 45
95 % 219 220 65
90 % 219 220 70
70 % 219 220 80
50 % 275 276 78
40 % 275 276 100
30 % 275 276 112
Entity #7 | Chains: G
30S RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 8 8113
95 % 256 257 40
90 % 256 257 46
70 % 256 257 55
50 % 355 356 33
40 % 356 357 42
30 % 356 357 61
Entity #8 | Chains: H
30S RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 255 256 33
95 % 255 256 44
90 % 255 256 49
70 % 255 256 58
50 % 356 360 30
40 % 356 360 40
30 % 358 362 58
Entity #9 | Chains: I
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 258 261 25
95 % 264 267 34
90 % 264 267 37
70 % 264 267 46
50 % 264 267 84
40 % 264 267 103
30 % 310 313 77

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.