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The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY
Sequence Clustering and Redundancy Reduction Results
1JGP
Sequence Clusters for the Sequence Entities in PDB 1JGP
Entity #1: Chains: A - 30S 16S ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 254 259 20
95% 255 260 37
90% 255 260 39
70% 255 260 51
50% 303 308 57
40% 304 309 74
30% 304 309 97
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 250 255 23
95% 250 255 41
90% 254 259 40
70% 254 259 52
50% 364 369 36
40% 366 371 49
30% 403 408 50
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 111 113 134
95% 253 255 45
90% 253 255 48
70% 253 255 60
50% 361 363 41
40% 361 363 57
30% 397 399 60
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 250 252 29
95% 252 254 48
90% 252 254 51
70% 252 254 63
50% 367 369 35
40% 367 369 48
30% 372 374 67
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 253 255 27
95% 253 255 44
90% 253 255 47
70% 253 255 59
50% 361 363 42
40% 401 403 39
30% 401 403 53
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 222 224 37
95% 260 262 36
90% 260 262 38
70% 373 375 25
50% 373 375 34
40% 373 375 47
30% 373 375 71
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 254 256 24
95% 254 256 42
90% 254 256 45
70% 254 256 57
50% 363 365 39
40% 363 365 54
30% 399 401 57
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 252 254 28
95% 252 254 49
90% 252 254 52
70% 252 254 64
50% 252 254 99
40% 252 254 124
30% 252 254 144
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 254 258 22
95% 259 263 35
90% 259 263 37
70% 259 263 48
50% 371 376 32
40% 371 376 45
30% 371 376 69
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S16 protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 5 11656
95% 252 255 46
90% 252 255 49
70% 252 255 61
50% 252 255 97
40% 252 255 122
30% 360 363 78
Entity #2: Chains: B,C - tRNA(Phe) rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 92 220
95% 247 249 51
90% 251 253 53
70% 251 253 65
50% 251 253 100
40% 251 253 126
30% 251 253 146
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 49 463
95% 219 221 64
90% 219 221 68
70% 219 221 81
50% 219 221 116
40% 219 221 144
30% 219 221 166
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 219 223 38
95% 219 223 63
90% 219 223 67
70% 219 223 80
50% 362 366 38
40% 362 366 53
30% 362 366 75
Entity #23: Chains: W - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 59 61 360
95% 252 254 47
90% 252 254 50
70% 252 254 62
50% 252 254 98
40% 252 254 123
30% 252 254 143
Entity #24: Chains: X - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 236 238 34
95% 236 238 55
90% 236 238 59
70% 236 238 71
50% 236 238 110
40% 236 238 133
30% 236 238 153
Entity #3: Chains: D - tRNA(Phe) rna, length: 74 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: 1 - MESSENGER RNA MV36 rna, length: 36 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 253 255 25
95% 254 256 39
90% 254 256 43
70% 254 256 55
50% 254 256 96
40% 361 363 56
30% 361 363 77
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 217 219 39
95% 217 219 66
90% 217 219 70
70% 217 219 83
50% 280 282 81
40% 280 282 102
30% 280 282 124
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 8 6549
95% 254 256 40
90% 254 256 44
70% 254 256 56
50% 361 363 40
40% 362 364 55
30% 362 364 76
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 253 255 26
95% 253 255 43
90% 253 255 46
70% 253 255 58
50% 362 367 37
40% 362 367 52
30% 364 369 73
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 256 260 18
95% 262 266 34
90% 262 266 36
70% 262 266 47
50% 262 266 88
40% 262 266 112
30% 309 313 95
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.