Sequence Similarity Clusters for the Entities in PDB 1JGP

Entity #1 | Chains: A
30S 16S ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 249 254 26
95 % 250 255 36
90 % 250 255 41
70 % 250 255 50
50 % 295 300 51
40 % 296 301 64
30 % 296 301 89
Entity #11 | Chains: K
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 245 250 30
95 % 245 250 41
90 % 249 254 42
70 % 249 254 51
50 % 339 344 30
40 % 341 346 40
30 % 414 419 35
Entity #12 | Chains: L
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 91 192
95 % 248 250 45
90 % 248 250 50
70 % 248 250 59
50 % 336 338 38
40 % 336 338 48
30 % 408 410 45
Entity #13 | Chains: M
30S RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 246 248 35
95 % 247 249 48
90 % 247 249 53
70 % 247 249 63
50 % 342 344 28
40 % 342 344 38
30 % 412 414 38
Entity #14 | Chains: N
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 248 250 33
95 % 248 250 44
90 % 248 250 49
70 % 248 250 58
50 % 336 338 37
40 % 413 415 23
30 % 414 416 37
Entity #15 | Chains: O
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 200 202 46
95 % 255 257 35
90 % 255 257 40
70 % 347 349 23
50 % 348 350 27
40 % 348 350 37
30 % 348 350 56
Entity #16 | Chains: P
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 249 251 31
95 % 249 251 42
90 % 249 251 47
70 % 249 251 56
50 % 341 343 34
40 % 341 343 46
30 % 413 415 44
Entity #17 | Chains: Q
30S RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 247 249 34
95 % 247 249 49
90 % 247 249 54
70 % 248 250 61
50 % 248 250 86
40 % 248 250 106
30 % 248 250 120
Entity #18 | Chains: R
30S RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 249 253 28
95 % 254 258 34
90 % 254 258 39
70 % 254 258 49
50 % 346 351 26
40 % 347 352 36
30 % 347 352 55
Entity #19 | Chains: S
30S RIBOSOMAL PROTEIN S16 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 13782
95 % 247 250 46
90 % 247 250 51
70 % 247 250 60
50 % 247 250 85
40 % 248 251 105
30 % 338 341 62
Entity #2 | Chains: B,C
tRNA(Phe) rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: T
30S RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 85 87 221
95 % 242 244 50
90 % 246 248 55
70 % 246 248 64
50 % 246 248 89
40 % 246 248 110
30 % 246 248 122
Entity #21 | Chains: U
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 51 579
95 % 213 215 63
90 % 213 215 66
70 % 213 215 78
50 % 213 215 109
40 % 213 215 129
30 % 213 215 142
Entity #22 | Chains: V
30S RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 249 253 27
95 % 249 253 37
90 % 249 253 43
70 % 249 253 52
50 % 337 341 33
40 % 337 341 44
30 % 337 341 59
Entity #23 | Chains: W
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 51 366
95 % 247 249 47
90 % 247 249 52
70 % 247 249 62
50 % 247 249 88
40 % 247 249 108
30 % 247 249 121
Entity #24 | Chains: X
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 238 240 40
95 % 238 240 56
90 % 238 240 60
70 % 238 240 69
50 % 238 240 93
40 % 238 240 116
30 % 238 240 130
Entity #3 | Chains: D
tRNA(Phe) rna, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: 1
MESSENGER RNA MV36 rna, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: E
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 248 250 29
95 % 249 251 39
90 % 249 251 45
70 % 249 251 54
50 % 335 337 36
40 % 336 338 47
30 % 336 338 61
Entity #6 | Chains: F
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 212 214 43
95 % 212 214 64
90 % 212 214 67
70 % 212 214 79
50 % 263 265 78
40 % 263 265 99
30 % 263 265 113
Entity #7 | Chains: G
30S RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 8 7838
95 % 249 251 40
90 % 249 251 46
70 % 249 251 55
50 % 336 338 35
40 % 337 339 45
30 % 337 339 60
Entity #8 | Chains: H
30S RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 248 250 32
95 % 248 250 43
90 % 248 250 48
70 % 248 250 57
50 % 337 342 32
40 % 337 342 43
30 % 339 344 58
Entity #9 | Chains: I
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 251 255 25
95 % 257 261 33
90 % 257 261 37
70 % 257 261 48
50 % 257 261 84
40 % 257 261 102
30 % 296 300 79

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.