1JGP

The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY


Sequence Similarity Clusters for the Entities in PDB 1JGP

Entity #1 | Chains: A
30S 16S ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 268 273 26
95 % 269 274 36
90 % 269 274 40
70 % 269 274 50
50 % 331 336 64
40 % 334 339 74
30 % 334 339 89
Entity #11 | Chains: K
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 264 269 32
95 % 264 269 42
90 % 268 273 41
70 % 268 273 51
50 % 389 394 26
40 % 393 398 35
30 % 492 497 28
Entity #12 | Chains: L
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 91 203
95 % 267 269 47
90 % 267 269 50
70 % 267 269 60
50 % 386 388 35
40 % 386 388 45
30 % 483 485 33
Entity #13 | Chains: M
30S RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 265 267 37
95 % 266 268 50
90 % 266 268 53
70 % 266 268 64
50 % 392 394 25
40 % 392 394 36
30 % 485 487 29
Entity #14 | Chains: N
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 267 269 35
95 % 267 269 46
90 % 267 269 49
70 % 267 269 59
50 % 386 388 34
40 % 482 484 18
30 % 482 484 31
Entity #15 | Chains: O
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 215 217 47
95 % 274 276 35
90 % 274 276 39
70 % 399 401 20
50 % 401 403 23
40 % 401 403 34
30 % 401 403 55
Entity #16 | Chains: P
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 268 270 33
95 % 268 270 43
90 % 268 270 47
70 % 268 270 56
50 % 391 393 32
40 % 391 393 44
30 % 486 488 32
Entity #17 | Chains: Q
30S RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 266 268 36
95 % 266 268 51
90 % 266 268 54
70 % 268 270 57
50 % 268 270 87
40 % 268 270 108
30 % 268 270 118
Entity #18 | Chains: R
30S RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 268 272 28
95 % 273 277 34
90 % 273 277 38
70 % 273 277 49
50 % 396 401 24
40 % 399 404 33
30 % 399 404 54
Entity #19 | Chains: S
30S RIBOSOMAL PROTEIN S16 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 14732
95 % 266 269 48
90 % 266 269 51
70 % 266 269 61
50 % 268 271 86
40 % 268 271 106
30 % 386 389 63
Entity #2 | Chains: B,C
tRNA(Phe) rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: T
30S RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 85 87 235
95 % 261 263 52
90 % 265 267 55
70 % 265 267 65
50 % 265 267 90
40 % 265 267 111
30 % 265 267 122
Entity #21 | Chains: U
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 51 645
95 % 232 234 62
90 % 232 234 66
70 % 232 234 77
50 % 232 234 103
40 % 232 234 129
30 % 232 234 140
Entity #22 | Chains: V
30S RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 268 272 27
95 % 268 272 39
90 % 268 272 44
70 % 268 272 53
50 % 389 393 28
40 % 389 393 39
30 % 389 393 58
Entity #23 | Chains: W
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 51 460
95 % 266 268 49
90 % 266 268 52
70 % 266 268 63
50 % 266 268 89
40 % 266 268 110
30 % 266 268 120
Entity #24 | Chains: X
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 257 259 41
95 % 257 259 55
90 % 257 259 58
70 % 257 259 68
50 % 257 259 93
40 % 257 259 116
30 % 257 259 129
Entity #3 | Chains: D
tRNA(Phe) rna, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: 1
MESSENGER RNA MV36 rna, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: E
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 267 269 31
95 % 268 270 40
90 % 268 270 45
70 % 268 270 54
50 % 385 387 33
40 % 388 390 42
30 % 388 390 61
Entity #6 | Chains: F
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 231 233 44
95 % 231 233 63
90 % 231 233 67
70 % 231 233 78
50 % 299 301 77
40 % 299 301 95
30 % 299 301 112
Entity #7 | Chains: G
30S RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 8 8407
95 % 268 270 41
90 % 268 270 46
70 % 268 270 55
50 % 387 389 31
40 % 390 392 40
30 % 390 392 60
Entity #8 | Chains: H
30S RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 267 269 34
95 % 267 269 45
90 % 267 269 48
70 % 267 269 58
50 % 388 393 29
40 % 388 393 41
30 % 390 395 57
Entity #9 | Chains: I
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 270 274 24
95 % 276 280 32
90 % 276 280 37
70 % 276 280 48
50 % 276 280 83
40 % 276 280 102
30 % 330 334 87

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.