1JGP

The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY


Sequence Similarity Clusters for the Entities in PDB 1JGP

Entity #1 | Chains: A
30S 16S ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 270 275 28
95 % 271 276 41
90 % 271 276 46
70 % 271 276 56
50 % 351 356 66
40 % 356 361 84
30 % 356 361 96
Entity #11 | Chains: K
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 266 271 32
95 % 266 271 45
90 % 270 275 47
70 % 270 275 57
50 % 416 421 27
40 % 422 427 37
30 % 537 542 30
Entity #12 | Chains: L
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 91 220
95 % 269 271 50
90 % 269 271 55
70 % 269 271 65
50 % 409 411 35
40 % 409 411 48
30 % 524 526 34
Entity #13 | Chains: M
30S RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 267 269 39
95 % 268 270 53
90 % 268 270 58
70 % 268 270 68
50 % 419 421 26
40 % 419 421 38
30 % 526 528 32
Entity #14 | Chains: N
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 269 271 35
95 % 269 271 49
90 % 269 271 54
70 % 269 271 64
50 % 413 415 32
40 % 535 537 19
30 % 535 537 31
Entity #15 | Chains: O
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 215 217 51
95 % 276 278 39
90 % 276 278 44
70 % 420 422 19
50 % 430 432 24
40 % 430 432 35
30 % 430 432 55
Entity #16 | Chains: P
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 270 272 33
95 % 270 272 46
90 % 270 272 51
70 % 270 272 62
50 % 417 419 31
40 % 417 419 43
30 % 525 527 36
Entity #17 | Chains: Q
30S RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 268 270 36
95 % 268 270 54
90 % 268 270 59
70 % 277 279 54
50 % 277 279 90
40 % 277 279 113
30 % 277 279 123
Entity #18 | Chains: R
30S RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 270 274 30
95 % 275 279 38
90 % 275 279 43
70 % 275 279 53
50 % 423 428 25
40 % 428 433 34
30 % 428 433 54
Entity #19 | Chains: S
30S RIBOSOMAL PROTEIN S16 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 15778
95 % 268 271 51
90 % 268 271 56
70 % 268 271 66
50 % 275 278 91
40 % 275 278 114
30 % 410 413 63
Entity #2 | Chains: B,C
tRNA(Phe) rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: T
30S RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 85 87 258
95 % 263 265 56
90 % 267 269 60
70 % 267 269 69
50 % 267 269 94
40 % 267 269 117
30 % 267 269 128
Entity #21 | Chains: U
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 51 719
95 % 234 236 65
90 % 234 236 69
70 % 234 236 81
50 % 234 236 111
40 % 234 236 135
30 % 234 236 144
Entity #22 | Chains: V
30S RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 270 274 29
95 % 270 274 42
90 % 270 274 48
70 % 270 274 58
50 % 417 421 28
40 % 420 424 40
30 % 420 424 57
Entity #23 | Chains: W
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 51 524
95 % 268 270 52
90 % 268 270 57
70 % 268 270 67
50 % 268 270 93
40 % 268 270 116
30 % 268 270 127
Entity #24 | Chains: X
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 259 261 43
95 % 259 261 59
90 % 259 261 63
70 % 259 261 74
50 % 259 261 98
40 % 259 261 121
30 % 259 261 133
Entity #3 | Chains: D
tRNA(Phe) rna, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: 1
MESSENGER RNA MV36 rna, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: E
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 269 271 31
95 % 270 272 43
90 % 270 272 49
70 % 270 272 59
50 % 407 409 36
40 % 412 414 45
30 % 412 414 62
Entity #6 | Chains: F
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 233 235 48
95 % 233 235 66
90 % 233 235 70
70 % 233 235 82
50 % 307 309 84
40 % 307 309 103
30 % 307 309 116
Entity #7 | Chains: G
30S RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 8 9009
95 % 270 272 44
90 % 270 272 50
70 % 270 272 60
50 % 414 416 29
40 % 419 421 41
30 % 419 421 58
Entity #8 | Chains: H
30S RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 269 271 34
95 % 269 271 48
90 % 269 271 53
70 % 269 271 63
50 % 412 417 30
40 % 412 417 42
30 % 414 419 60
Entity #9 | Chains: I
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 272 276 27
95 % 278 282 37
90 % 278 282 42
70 % 278 282 51
50 % 278 282 88
40 % 278 282 110
30 % 351 355 95

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.