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The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY
Sequence Clustering and Redundancy Reduction Results
1JGP
Sequence Clusters for the Sequence Entities in PDB 1JGP
Entity #1: Chains: A - 30S 16S ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 218 223 27
95% 219 224 40
90% 219 224 44
70% 219 224 54
50% 262 267 51
40% 263 268 64
30% 263 268 83
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 214 219 31
95% 214 219 44
90% 218 223 45
70% 218 223 55
50% 301 306 35
40% 303 308 43
30% 368 373 37
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 87 89 181
95% 217 219 48
90% 217 219 52
70% 217 219 62
50% 298 300 43
40% 298 300 52
30% 362 364 46
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 215 217 36
95% 216 218 51
90% 216 218 55
70% 216 218 66
50% 304 306 31
40% 304 306 42
30% 366 368 40
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 217 219 34
95% 217 219 47
90% 217 219 51
70% 217 219 61
50% 298 300 42
40% 367 369 30
30% 368 370 38
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 180 182 46
95% 224 226 39
90% 224 226 43
70% 309 311 22
50% 310 312 30
40% 310 312 41
30% 310 312 57
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 218 220 32
95% 218 220 45
90% 218 220 49
70% 218 220 59
50% 303 305 39
40% 303 305 50
30% 367 369 44
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 216 218 35
95% 216 218 52
90% 216 218 56
70% 217 219 64
50% 217 219 92
40% 217 219 114
30% 217 219 128
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 218 222 29
95% 223 227 36
90% 223 227 40
70% 223 227 52
50% 308 313 29
40% 309 314 39
30% 309 314 54
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S16 protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 5 12851
95% 216 219 49
90% 216 219 53
70% 216 219 63
50% 216 219 91
40% 217 220 113
30% 300 303 70
Entity #2: Chains: B,C - tRNA(Phe) rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 78 80 226
95% 211 213 56
90% 215 217 58
70% 215 217 69
50% 215 217 94
40% 215 217 116
30% 215 217 130
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 49 532
95% 192 194 64
90% 192 194 67
70% 192 194 79
50% 192 194 113
40% 192 194 131
30% 192 194 150
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 218 222 28
95% 218 222 41
90% 218 222 46
70% 218 222 56
50% 299 303 38
40% 299 303 48
30% 299 303 67
Entity #23: Chains: W - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 49 371
95% 216 218 50
90% 216 218 54
70% 216 218 65
50% 216 218 93
40% 216 218 115
30% 216 218 129
Entity #24: Chains: X - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 207 209 40
95% 207 209 59
90% 207 209 62
70% 207 209 73
50% 207 209 100
40% 207 209 123
30% 207 209 135
Entity #3: Chains: D - tRNA(Phe) rna, length: 74 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: 1 - MESSENGER RNA MV36 rna, length: 36 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 217 219 30
95% 218 220 42
90% 218 220 47
70% 218 220 57
50% 297 299 41
40% 298 300 51
30% 298 300 69
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 191 193 45
95% 191 193 65
90% 191 193 68
70% 191 193 80
50% 235 237 77
40% 235 237 102
30% 235 237 121
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 8 7269
95% 218 220 43
90% 218 220 48
70% 218 220 58
50% 298 300 40
40% 299 301 49
30% 299 301 68
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 217 219 33
95% 217 219 46
90% 217 219 50
70% 217 219 60
50% 299 304 37
40% 299 304 47
30% 301 306 63
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 220 224 25
95% 226 230 24
90% 226 230 29
70% 226 230 41
50% 226 230 83
40% 226 230 108
30% 265 269 80
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.