Sequence Similarity Clusters for the Entities in PDB 1JGP

Entity #1 | Chains: A
30S 16S ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 246 251 25
95 % 247 252 36
90 % 247 252 41
70 % 247 252 50
50 % 292 297 49
40 % 293 298 62
30 % 293 298 86
Entity #11 | Chains: K
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 242 247 29
95 % 242 247 40
90 % 246 251 42
70 % 246 251 51
50 % 335 340 31
40 % 337 342 40
30 % 406 411 39
Entity #12 | Chains: L
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 90 194
95 % 245 247 44
90 % 245 247 49
70 % 245 247 58
50 % 332 334 38
40 % 332 334 48
30 % 400 402 45
Entity #13 | Chains: M
30S RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 243 245 34
95 % 244 246 47
90 % 244 246 52
70 % 244 246 63
50 % 338 340 29
40 % 338 340 39
30 % 404 406 41
Entity #14 | Chains: N
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 245 247 32
95 % 245 247 43
90 % 245 247 48
70 % 245 247 57
50 % 332 334 37
40 % 405 407 27
30 % 406 408 40
Entity #15 | Chains: O
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 198 200 45
95 % 252 254 35
90 % 252 254 40
70 % 343 345 23
50 % 344 346 28
40 % 344 346 38
30 % 344 346 57
Entity #16 | Chains: P
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 246 248 30
95 % 246 248 41
90 % 246 248 46
70 % 246 248 55
50 % 337 339 34
40 % 337 339 46
30 % 405 407 44
Entity #17 | Chains: Q
30S RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 244 246 33
95 % 244 246 48
90 % 244 246 53
70 % 245 247 60
50 % 245 247 85
40 % 245 247 107
30 % 245 247 119
Entity #18 | Chains: R
30S RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 246 250 27
95 % 251 255 33
90 % 251 255 38
70 % 251 255 48
50 % 342 347 27
40 % 343 348 37
30 % 343 348 56
Entity #19 | Chains: S
30S RIBOSOMAL PROTEIN S16 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 13684
95 % 244 247 45
90 % 244 247 50
70 % 244 247 59
50 % 244 247 84
40 % 245 248 105
30 % 334 337 63
Entity #2 | Chains: B,C
tRNA(Phe) rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: T
30S RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 82 84 229
95 % 239 241 49
90 % 243 245 54
70 % 243 245 64
50 % 243 245 87
40 % 243 245 109
30 % 243 245 121
Entity #21 | Chains: U
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 49 585
95 % 210 212 63
90 % 210 212 66
70 % 210 212 77
50 % 210 212 108
40 % 210 212 129
30 % 210 212 142
Entity #22 | Chains: V
30S RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 246 250 26
95 % 246 250 37
90 % 246 250 43
70 % 246 250 52
50 % 333 337 33
40 % 333 337 44
30 % 333 337 59
Entity #23 | Chains: W
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 50 380
95 % 244 246 46
90 % 244 246 51
70 % 244 246 62
50 % 244 246 86
40 % 244 246 108
30 % 244 246 120
Entity #24 | Chains: X
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 235 237 39
95 % 235 237 55
90 % 235 237 59
70 % 235 237 69
50 % 235 237 93
40 % 235 237 115
30 % 235 237 130
Entity #3 | Chains: D
tRNA(Phe) rna, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: 1
MESSENGER RNA MV36 rna, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: E
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 245 247 28
95 % 246 248 38
90 % 246 248 44
70 % 246 248 53
50 % 331 333 36
40 % 332 334 47
30 % 332 334 61
Entity #6 | Chains: F
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 209 211 43
95 % 209 211 64
90 % 209 211 67
70 % 209 211 78
50 % 259 261 80
40 % 259 261 98
30 % 259 261 116
Entity #7 | Chains: G
30S RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 8 7769
95 % 246 248 39
90 % 246 248 45
70 % 246 248 54
50 % 332 334 35
40 % 333 335 45
30 % 333 335 60
Entity #8 | Chains: H
30S RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 245 247 31
95 % 245 247 42
90 % 245 247 47
70 % 245 247 56
50 % 333 338 32
40 % 333 338 43
30 % 335 340 58
Entity #9 | Chains: I
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 248 252 24
95 % 254 258 32
90 % 254 258 36
70 % 254 258 47
50 % 254 258 82
40 % 254 258 101
30 % 293 297 79

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.