1JGP

The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY


Sequence Similarity Clusters for the Entities in PDB 1JGP

Entity #1 | Chains: A
30S 16S ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 255 260 26
95 % 256 261 37
90 % 256 261 42
70 % 256 261 51
50 % 308 313 54
40 % 309 314 68
30 % 309 314 89
Entity #11 | Chains: K
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 251 256 31
95 % 251 256 42
90 % 255 260 43
70 % 255 260 52
50 % 357 362 29
40 % 359 364 39
30 % 438 443 33
Entity #12 | Chains: L
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 91 198
95 % 254 256 46
90 % 254 256 51
70 % 254 256 60
50 % 354 356 36
40 % 354 356 46
30 % 431 433 40
Entity #13 | Chains: M
30S RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 252 254 36
95 % 253 255 49
90 % 253 255 54
70 % 253 255 64
50 % 360 362 28
40 % 360 362 38
30 % 434 436 36
Entity #14 | Chains: N
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 254 256 34
95 % 254 256 45
90 % 254 256 50
70 % 254 256 59
50 % 354 356 35
40 % 436 438 20
30 % 437 439 34
Entity #15 | Chains: O
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 206 208 46
95 % 261 263 36
90 % 261 263 41
70 % 365 367 22
50 % 366 368 27
40 % 366 368 37
30 % 366 368 57
Entity #16 | Chains: P
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 255 257 32
95 % 255 257 43
90 % 255 257 48
70 % 255 257 57
50 % 359 361 32
40 % 359 361 43
30 % 435 437 39
Entity #17 | Chains: Q
30S RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 253 255 35
95 % 253 255 50
90 % 253 255 55
70 % 254 256 62
50 % 254 256 88
40 % 254 256 108
30 % 254 256 120
Entity #18 | Chains: R
30S RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 255 259 29
95 % 260 264 35
90 % 260 264 40
70 % 260 264 50
50 % 364 369 26
40 % 365 370 36
30 % 365 370 56
Entity #19 | Chains: S
30S RIBOSOMAL PROTEIN S16 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 14270
95 % 253 256 47
90 % 253 256 52
70 % 253 256 61
50 % 253 256 87
40 % 254 257 107
30 % 356 359 63
Entity #2 | Chains: B,C
tRNA(Phe) rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: T
30S RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 85 87 225
95 % 248 250 51
90 % 252 254 56
70 % 252 254 66
50 % 252 254 90
40 % 252 254 111
30 % 252 254 123
Entity #21 | Chains: U
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 51 616
95 % 219 221 64
90 % 219 221 69
70 % 219 221 79
50 % 219 221 111
40 % 219 221 132
30 % 219 221 143
Entity #22 | Chains: V
30S RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 255 259 27
95 % 255 259 38
90 % 255 259 44
70 % 255 259 53
50 % 355 359 31
40 % 355 359 41
30 % 355 359 59
Entity #23 | Chains: W
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 51 384
95 % 253 255 48
90 % 253 255 53
70 % 253 255 63
50 % 253 255 89
40 % 253 255 110
30 % 253 255 122
Entity #24 | Chains: X
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 244 246 39
95 % 244 246 54
90 % 244 246 59
70 % 244 246 69
50 % 244 246 95
40 % 244 246 118
30 % 244 246 131
Entity #3 | Chains: D
tRNA(Phe) rna, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: 1
MESSENGER RNA MV36 rna, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: E
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 254 256 30
95 % 255 257 39
90 % 255 257 45
70 % 255 257 54
50 % 353 355 34
40 % 354 356 44
30 % 354 356 62
Entity #6 | Chains: F
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 218 220 45
95 % 218 220 65
90 % 218 220 70
70 % 218 220 80
50 % 274 276 78
40 % 274 276 100
30 % 274 276 112
Entity #7 | Chains: G
30S RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 8 8113
95 % 255 257 40
90 % 255 257 46
70 % 255 257 55
50 % 354 356 33
40 % 355 357 42
30 % 355 357 61
Entity #8 | Chains: H
30S RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 254 256 33
95 % 254 256 44
90 % 254 256 49
70 % 254 256 58
50 % 355 360 30
40 % 355 360 40
30 % 357 362 58
Entity #9 | Chains: I
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 257 261 25
95 % 263 267 34
90 % 263 267 37
70 % 263 267 46
50 % 263 267 84
40 % 263 267 103
30 % 309 313 77

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.