POP-OUT | CLOSE

An Information Portal to 105906 Biological Macromolecular Structures

The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY
Sequence Clustering and Redundancy Reduction Results
1JGP
Sequence Clusters for the Sequence Entities in PDB 1JGP
Entity #1: Chains: A - 30S 16S ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 190 195 20
95% 191 196 36
90% 191 196 38
70% 191 196 49
50% 232 237 56
40% 233 238 74
30% 233 238 96
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 186 191 22
95% 186 191 39
90% 190 195 39
70% 190 195 50
50% 266 271 35
40% 268 273 47
30% 318 323 44
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 87 89 144
95% 189 191 44
90% 189 191 46
70% 189 191 57
50% 263 265 40
40% 263 265 55
30% 312 314 52
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 187 189 28
95% 188 190 47
90% 188 190 50
70% 188 190 60
50% 269 271 34
40% 269 271 46
30% 274 276 66
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 189 191 26
95% 189 191 43
90% 189 191 45
70% 189 191 56
50% 263 265 41
40% 316 318 35
30% 316 318 45
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 158 160 35
95% 196 198 34
90% 196 198 36
70% 275 277 24
50% 275 277 33
40% 275 277 45
30% 275 277 69
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 190 192 23
95% 190 192 40
90% 190 192 43
70% 190 192 54
50% 268 270 38
40% 268 270 51
30% 317 319 49
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 188 190 27
95% 188 190 48
90% 188 190 51
70% 188 190 61
50% 188 190 94
40% 188 190 119
30% 188 190 142
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 190 194 21
95% 195 199 33
90% 195 199 35
70% 195 199 47
50% 273 278 32
40% 273 278 43
30% 273 278 67
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S16 protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 5 12030
95% 188 191 45
90% 188 191 48
70% 188 191 58
50% 188 191 92
40% 188 191 117
30% 265 268 78
Entity #2: Chains: B,C - tRNA(Phe) rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 77 79 223
95% 183 185 49
90% 187 189 52
70% 187 189 62
50% 187 189 95
40% 187 189 120
30% 187 189 143
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 49 494
95% 166 168 61
90% 166 168 64
70% 166 168 80
50% 166 168 117
40% 166 168 140
30% 166 168 163
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 166 170 37
95% 166 170 59
90% 166 170 63
70% 166 170 78
50% 264 268 37
40% 264 268 50
30% 264 268 74
Entity #23: Chains: W - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 48 363
95% 188 190 46
90% 188 190 49
70% 188 190 59
50% 188 190 93
40% 188 190 118
30% 188 190 141
Entity #24: Chains: X - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 179 181 34
95% 179 181 53
90% 179 181 55
70% 179 181 69
50% 179 181 105
40% 179 181 132
30% 179 181 151
Entity #3: Chains: D - tRNA(Phe) rna, length: 74 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: 1 - MESSENGER RNA MV36 rna, length: 36 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 189 191 24
95% 190 192 37
90% 190 192 41
70% 190 192 52
50% 190 192 91
40% 263 265 54
30% 263 265 77
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 165 167 38
95% 165 167 63
90% 165 167 66
70% 165 167 82
50% 204 206 77
40% 204 206 101
30% 204 206 122
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 8 6767
95% 190 192 38
90% 190 192 42
70% 190 192 53
50% 263 265 39
40% 264 266 52
30% 264 266 76
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 189 191 25
95% 189 191 42
90% 189 191 44
70% 189 191 55
50% 264 269 36
40% 264 269 49
30% 266 271 73
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 192 196 19
95% 198 202 30
90% 198 202 31
70% 198 202 45
50% 198 202 84
40% 198 202 108
30% 235 239 93
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.