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The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY
Sequence Clustering and Redundancy Reduction Results
1JGP
Sequence Clusters for the Sequence Entities in PDB 1JGP
Entity #1: Chains: A - 30S 16S ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 198 203 18
95% 199 204 32
90% 199 204 34
70% 199 204 44
50% 241 246 54
40% 242 247 71
30% 242 247 94
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 194 199 21
95% 194 199 37
90% 198 203 35
70% 198 203 45
50% 277 282 36
40% 279 284 46
30% 333 338 44
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 88 90 158
95% 197 199 41
90% 197 199 43
70% 197 199 55
50% 274 276 41
40% 274 276 54
30% 327 329 50
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 195 197 29
95% 196 198 45
90% 196 198 47
70% 196 198 59
50% 280 282 35
40% 280 282 45
30% 331 333 46
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 197 199 25
95% 197 199 40
90% 197 199 42
70% 197 199 54
50% 274 276 42
40% 331 333 35
30% 331 333 45
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 164 166 36
95% 204 206 31
90% 204 206 33
70% 286 288 24
50% 286 288 34
40% 286 288 44
30% 286 288 69
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 198 200 22
95% 198 200 38
90% 198 200 40
70% 198 200 51
50% 279 281 39
40% 279 281 50
30% 332 334 49
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 196 198 26
95% 196 198 46
90% 196 198 48
70% 196 198 60
50% 196 198 92
40% 196 198 114
30% 196 198 138
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 198 202 20
95% 203 207 30
90% 203 207 32
70% 203 207 43
50% 284 289 33
40% 284 289 43
30% 284 289 67
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S16 protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 5 12348
95% 196 199 42
90% 196 199 44
70% 196 199 56
50% 196 199 89
40% 196 199 112
30% 276 279 76
Entity #2: Chains: B,C - tRNA(Phe) rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 78 80 222
95% 191 193 50
90% 195 197 49
70% 195 197 61
50% 195 197 93
40% 195 197 116
30% 195 197 139
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 49 508
95% 172 174 71
90% 172 174 75
70% 172 174 89
50% 172 174 130
40% 172 174 148
30% 172 174 164
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 198 202 19
95% 198 202 33
90% 198 202 36
70% 198 202 47
50% 275 279 38
40% 275 279 49
30% 275 279 73
Entity #23: Chains: W - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 49 358
95% 196 198 44
90% 196 198 46
70% 196 198 58
50% 196 198 91
40% 196 198 113
30% 196 198 137
Entity #24: Chains: X - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 187 189 32
95% 187 189 52
90% 187 189 55
70% 187 189 67
50% 187 189 112
40% 187 189 135
30% 187 189 153
Entity #3: Chains: D - tRNA(Phe) rna, length: 74 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: 1 - MESSENGER RNA MV36 rna, length: 36 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 197 199 23
95% 198 200 35
90% 198 200 38
70% 198 200 48
50% 198 200 88
40% 274 276 53
30% 274 276 75
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 171 173 48
95% 171 173 72
90% 171 173 76
70% 171 173 91
50% 212 214 76
40% 212 214 102
30% 212 214 122
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 8 6973
95% 198 200 36
90% 198 200 39
70% 198 200 49
50% 274 276 40
40% 275 277 51
30% 275 277 74
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 197 199 24
95% 197 199 39
90% 197 199 41
70% 197 199 52
50% 275 280 37
40% 275 280 48
30% 277 282 72
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 200 204 17
95% 206 210 29
90% 206 210 31
70% 206 210 42
50% 206 210 82
40% 206 210 107
30% 244 248 87
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.