1JGP

The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY


Sequence Similarity Clusters for the Entities in PDB 1JGP

Entity #1 | Chains: A
30S 16S ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 269 274 28
95 % 270 275 41
90 % 270 275 46
70 % 270 275 57
50 % 349 354 68
40 % 354 359 85
30 % 354 359 95
Entity #11 | Chains: K
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 265 270 32
95 % 265 270 46
90 % 269 274 47
70 % 269 274 58
50 % 414 419 27
40 % 420 425 37
30 % 532 537 30
Entity #12 | Chains: L
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 91 217
95 % 268 270 50
90 % 268 270 55
70 % 268 270 66
50 % 408 410 35
40 % 408 410 48
30 % 517 519 35
Entity #13 | Chains: M
30S RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 266 268 39
95 % 267 269 53
90 % 267 269 58
70 % 267 269 69
50 % 417 419 26
40 % 417 419 38
30 % 522 524 31
Entity #14 | Chains: N
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 268 270 35
95 % 268 270 49
90 % 268 270 54
70 % 268 270 65
50 % 411 413 32
40 % 522 524 19
30 % 522 524 32
Entity #15 | Chains: O
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 215 217 51
95 % 275 277 40
90 % 275 277 45
70 % 418 420 20
50 % 428 430 24
40 % 428 430 36
30 % 428 430 55
Entity #16 | Chains: P
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 269 271 33
95 % 269 271 47
90 % 269 271 52
70 % 269 271 63
50 % 415 417 31
40 % 415 417 45
30 % 520 522 34
Entity #17 | Chains: Q
30S RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 267 269 38
95 % 267 269 54
90 % 267 269 59
70 % 275 277 56
50 % 275 277 91
40 % 275 277 115
30 % 275 277 123
Entity #18 | Chains: R
30S RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 269 273 30
95 % 274 278 38
90 % 274 278 43
70 % 274 278 54
50 % 421 426 25
40 % 426 431 35
30 % 426 431 54
Entity #19 | Chains: S
30S RIBOSOMAL PROTEIN S16 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 15533
95 % 267 270 51
90 % 267 270 56
70 % 267 270 67
50 % 274 277 90
40 % 274 277 114
30 % 409 412 63
Entity #2 | Chains: B,C
tRNA(Phe) rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: T
30S RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 85 87 251
95 % 262 264 56
90 % 266 268 60
70 % 266 268 70
50 % 266 268 94
40 % 266 268 117
30 % 266 268 128
Entity #21 | Chains: U
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 51 706
95 % 233 235 65
90 % 233 235 70
70 % 233 235 83
50 % 233 235 111
40 % 233 235 135
30 % 233 235 143
Entity #22 | Chains: V
30S RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 269 273 29
95 % 269 273 42
90 % 269 273 48
70 % 269 273 59
50 % 415 419 28
40 % 418 422 39
30 % 418 422 56
Entity #23 | Chains: W
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 51 508
95 % 267 269 52
90 % 267 269 57
70 % 267 269 68
50 % 267 269 93
40 % 267 269 116
30 % 267 269 127
Entity #24 | Chains: X
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 258 260 43
95 % 258 260 59
90 % 258 260 63
70 % 258 260 75
50 % 258 260 98
40 % 258 260 121
30 % 258 260 132
Entity #3 | Chains: D
tRNA(Phe) rna, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: 1
MESSENGER RNA MV36 rna, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: E
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 268 270 31
95 % 269 271 44
90 % 269 271 50
70 % 269 271 61
50 % 406 408 36
40 % 411 413 44
30 % 411 413 62
Entity #6 | Chains: F
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 232 234 48
95 % 232 234 66
90 % 232 234 71
70 % 232 234 84
50 % 306 308 84
40 % 306 308 103
30 % 306 308 116
Entity #7 | Chains: G
30S RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 8 8892
95 % 269 271 45
90 % 269 271 51
70 % 269 271 62
50 % 412 414 30
40 % 417 419 40
30 % 417 419 57
Entity #8 | Chains: H
30S RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 268 270 34
95 % 268 270 48
90 % 268 270 53
70 % 268 270 64
50 % 411 416 29
40 % 411 416 41
30 % 413 418 60
Entity #9 | Chains: I
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 271 275 27
95 % 277 281 37
90 % 277 281 41
70 % 277 281 52
50 % 277 281 88
40 % 277 281 110
30 % 349 353 93

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.