Sequence Similarity Clusters for the Entities in PDB 1JGP

Entity #1 | Chains: A
30S 16S ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 253 258 25
95 % 254 259 36
90 % 254 259 41
70 % 254 259 50
50 % 299 304 51
40 % 300 305 64
30 % 300 305 87
Entity #11 | Chains: K
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 249 254 29
95 % 249 254 40
90 % 253 258 42
70 % 253 258 51
50 % 343 348 29
40 % 345 350 39
30 % 420 425 33
Entity #12 | Chains: L
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 91 192
95 % 252 254 45
90 % 252 254 50
70 % 252 254 59
50 % 340 342 37
40 % 340 342 48
30 % 414 416 42
Entity #13 | Chains: M
30S RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 250 252 35
95 % 251 253 48
90 % 251 253 53
70 % 251 253 63
50 % 346 348 28
40 % 346 348 38
30 % 418 420 36
Entity #14 | Chains: N
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 252 254 33
95 % 252 254 44
90 % 252 254 49
70 % 252 254 58
50 % 340 342 36
40 % 419 421 22
30 % 420 422 35
Entity #15 | Chains: O
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 204 206 45
95 % 259 261 35
90 % 259 261 39
70 % 351 353 23
50 % 352 354 27
40 % 352 354 37
30 % 352 354 56
Entity #16 | Chains: P
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 253 255 30
95 % 253 255 41
90 % 253 255 46
70 % 253 255 55
50 % 345 347 33
40 % 345 347 45
30 % 419 421 41
Entity #17 | Chains: Q
30S RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 251 253 34
95 % 251 253 49
90 % 251 253 54
70 % 252 254 61
50 % 252 254 86
40 % 252 254 107
30 % 252 254 119
Entity #18 | Chains: R
30S RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 253 257 27
95 % 258 262 34
90 % 258 262 38
70 % 258 262 49
50 % 350 355 26
40 % 351 356 36
30 % 351 356 55
Entity #19 | Chains: S
30S RIBOSOMAL PROTEIN S16 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 13933
95 % 251 254 46
90 % 251 254 51
70 % 251 254 60
50 % 251 254 85
40 % 252 255 106
30 % 342 345 63
Entity #2 | Chains: B,C
tRNA(Phe) rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: T
30S RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 85 87 223
95 % 246 248 50
90 % 250 252 55
70 % 250 252 64
50 % 250 252 88
40 % 250 252 109
30 % 250 252 122
Entity #21 | Chains: U
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 51 598
95 % 217 219 63
90 % 217 219 68
70 % 217 219 78
50 % 217 219 108
40 % 217 219 130
30 % 217 219 142
Entity #22 | Chains: V
30S RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 253 257 26
95 % 253 257 37
90 % 253 257 43
70 % 253 257 52
50 % 341 345 31
40 % 341 345 42
30 % 341 345 60
Entity #23 | Chains: W
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 51 370
95 % 251 253 47
90 % 251 253 52
70 % 251 253 62
50 % 251 253 87
40 % 251 253 108
30 % 251 253 121
Entity #24 | Chains: X
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 242 244 38
95 % 242 244 54
90 % 242 244 57
70 % 242 244 68
50 % 242 244 92
40 % 242 244 115
30 % 242 244 129
Entity #3 | Chains: D
tRNA(Phe) rna, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: 1
MESSENGER RNA MV36 rna, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: E
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 252 254 28
95 % 253 255 38
90 % 253 255 44
70 % 253 255 53
50 % 339 341 35
40 % 340 342 47
30 % 340 342 62
Entity #6 | Chains: F
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 216 218 44
95 % 216 218 64
90 % 216 218 69
70 % 216 218 79
50 % 267 269 79
40 % 267 269 98
30 % 267 269 112
Entity #7 | Chains: G
30S RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 8 7915
95 % 253 255 39
90 % 253 255 45
70 % 253 255 54
50 % 340 342 34
40 % 341 343 44
30 % 341 343 61
Entity #8 | Chains: H
30S RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 252 254 32
95 % 252 254 43
90 % 252 254 48
70 % 252 254 57
50 % 341 346 30
40 % 341 346 41
30 % 343 348 57
Entity #9 | Chains: I
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 255 259 24
95 % 261 265 33
90 % 261 265 36
70 % 261 265 44
50 % 261 265 82
40 % 261 265 101
30 % 300 304 78

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.