Sequence Similarity Clusters for the Entities in PDB 1JGP

Entity #1 | Chains: A
30S 16S ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 246 251 26
95 % 247 252 37
90 % 247 252 42
70 % 247 252 51
50 % 292 297 51
40 % 293 298 63
30 % 293 298 89
Entity #11 | Chains: K
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 242 247 30
95 % 242 247 41
90 % 246 251 43
70 % 246 251 52
50 % 336 341 31
40 % 338 343 40
30 % 407 412 39
Entity #12 | Chains: L
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 90 195
95 % 245 247 45
90 % 245 247 50
70 % 245 247 60
50 % 333 335 39
40 % 333 335 48
30 % 401 403 45
Entity #13 | Chains: M
30S RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 243 245 35
95 % 244 246 48
90 % 244 246 53
70 % 244 246 64
50 % 339 341 29
40 % 339 341 39
30 % 405 407 41
Entity #14 | Chains: N
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 245 247 33
95 % 245 247 44
90 % 245 247 49
70 % 245 247 59
50 % 333 335 38
40 % 406 408 26
30 % 407 409 40
Entity #15 | Chains: O
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 198 200 46
95 % 252 254 36
90 % 252 254 41
70 % 344 346 23
50 % 345 347 28
40 % 345 347 38
30 % 345 347 57
Entity #16 | Chains: P
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 246 248 31
95 % 246 248 42
90 % 246 248 47
70 % 246 248 57
50 % 338 340 34
40 % 338 340 46
30 % 406 408 44
Entity #17 | Chains: Q
30S RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 244 246 34
95 % 244 246 49
90 % 244 246 54
70 % 245 247 62
50 % 245 247 87
40 % 245 247 109
30 % 245 247 120
Entity #18 | Chains: R
30S RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 246 250 28
95 % 251 255 34
90 % 251 255 39
70 % 251 255 49
50 % 343 348 26
40 % 344 349 37
30 % 344 349 56
Entity #19 | Chains: S
30S RIBOSOMAL PROTEIN S16 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 13710
95 % 244 247 46
90 % 244 247 51
70 % 244 247 61
50 % 244 247 86
40 % 245 248 107
30 % 335 338 62
Entity #2 | Chains: B,C
tRNA(Phe) rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: T
30S RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 82 84 229
95 % 239 241 50
90 % 243 245 55
70 % 243 245 65
50 % 243 245 89
40 % 243 245 111
30 % 243 245 122
Entity #21 | Chains: U
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 49 587
95 % 210 212 65
90 % 210 212 68
70 % 210 212 79
50 % 210 212 110
40 % 210 212 131
30 % 210 212 143
Entity #22 | Chains: V
30S RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 246 250 27
95 % 246 250 38
90 % 246 250 44
70 % 246 250 53
50 % 334 338 33
40 % 334 338 44
30 % 334 338 59
Entity #23 | Chains: W
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 50 380
95 % 244 246 47
90 % 244 246 52
70 % 244 246 63
50 % 244 246 88
40 % 244 246 110
30 % 244 246 121
Entity #24 | Chains: X
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 235 237 40
95 % 235 237 57
90 % 235 237 60
70 % 235 237 70
50 % 235 237 95
40 % 235 237 117
30 % 235 237 131
Entity #3 | Chains: D
tRNA(Phe) rna, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: 1
MESSENGER RNA MV36 rna, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: E
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 245 247 29
95 % 246 248 39
90 % 246 248 45
70 % 246 248 54
50 % 332 334 37
40 % 333 335 47
30 % 333 335 61
Entity #6 | Chains: F
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 209 211 44
95 % 209 211 66
90 % 209 211 69
70 % 209 211 80
50 % 260 262 82
40 % 260 262 100
30 % 260 262 116
Entity #7 | Chains: G
30S RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 8 7787
95 % 246 248 40
90 % 246 248 46
70 % 246 248 55
50 % 333 335 35
40 % 334 336 45
30 % 334 336 60
Entity #8 | Chains: H
30S RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 245 247 32
95 % 245 247 43
90 % 245 247 48
70 % 245 247 58
50 % 334 339 32
40 % 334 339 43
30 % 336 341 58
Entity #9 | Chains: I
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 248 252 25
95 % 254 258 33
90 % 254 258 37
70 % 254 258 48
50 % 254 258 84
40 % 254 258 103
30 % 293 297 80

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.