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The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY
Sequence Clustering and Redundancy Reduction Results
1JGP
Sequence Clusters for the Sequence Entities in PDB 1JGP
Entity #1: Chains: A - 30S 16S ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 205 210 16
95% 206 211 32
90% 206 211 35
70% 206 211 44
50% 249 254 51
40% 250 255 67
30% 250 255 88
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 201 206 19
95% 201 206 38
90% 205 210 36
70% 205 210 45
50% 285 290 36
40% 287 292 46
30% 341 347 44
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 88 90 160
95% 204 206 42
90% 204 206 44
70% 204 206 53
50% 282 284 42
40% 282 284 52
30% 335 338 49
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 202 204 25
95% 203 205 45
90% 203 205 47
70% 203 205 57
50% 288 290 35
40% 288 290 45
30% 339 342 46
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 204 206 23
95% 204 206 41
90% 204 206 43
70% 204 206 52
50% 282 284 41
40% 340 343 34
30% 341 344 45
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 170 172 33
95% 211 213 31
90% 211 213 34
70% 293 295 24
50% 294 296 34
40% 294 296 44
30% 294 296 67
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 205 207 20
95% 205 207 39
90% 205 207 41
70% 205 207 50
50% 287 289 39
40% 287 289 49
30% 340 343 48
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 203 205 24
95% 203 205 46
90% 203 205 48
70% 204 206 55
50% 204 206 85
40% 204 206 110
30% 204 206 129
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 205 209 18
95% 210 214 29
90% 210 214 32
70% 210 214 42
50% 292 297 33
40% 293 298 43
30% 293 298 65
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S16 protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 5 12433
95% 203 206 43
90% 203 206 45
70% 203 206 54
50% 203 206 84
40% 204 207 109
30% 284 287 74
Entity #2: Chains: B,C - tRNA(Phe) rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 78 80 223
95% 198 200 47
90% 202 204 49
70% 202 204 58
50% 202 204 87
40% 202 204 112
30% 202 204 131
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 49 515
95% 178 180 55
90% 178 180 57
70% 178 180 72
50% 178 180 119
40% 178 180 143
30% 178 180 159
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 205 209 17
95% 205 209 33
90% 205 209 37
70% 205 209 46
50% 283 287 38
40% 283 287 48
30% 283 287 71
Entity #23: Chains: W - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 49 361
95% 203 205 44
90% 203 205 46
70% 203 205 56
50% 203 205 86
40% 203 205 111
30% 203 205 130
Entity #24: Chains: X - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 194 196 32
95% 194 196 51
90% 194 196 53
70% 194 196 64
50% 194 196 97
40% 194 196 120
30% 194 196 143
Entity #3: Chains: D - tRNA(Phe) rna, length: 74 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: 1 - MESSENGER RNA MV36 rna, length: 36 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 204 206 21
95% 205 207 35
90% 205 207 38
70% 205 207 47
50% 281 283 43
40% 282 284 51
30% 282 284 73
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 177 179 36
95% 177 179 56
90% 177 179 59
70% 177 179 73
50% 218 220 77
40% 218 220 100
30% 218 220 120
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 8 7027
95% 205 207 37
90% 205 207 40
70% 205 207 49
50% 282 284 40
40% 283 285 50
30% 283 285 72
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 204 206 22
95% 204 206 40
90% 204 206 42
70% 204 206 51
50% 283 288 37
40% 283 288 47
30% 285 290 69
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 207 211 15
95% 213 217 28
90% 213 217 31
70% 213 217 41
50% 213 217 78
40% 213 217 102
30% 252 256 85
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.