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An Information Portal to 110790 Biological Macromolecular Structures

The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY
Sequence Clustering and Redundancy Reduction Results
1JGP
Sequence Clusters for the Sequence Entities in PDB 1JGP
Entity #1: Chains: A - 30S 16S ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 219 224 26
95% 220 225 40
90% 220 225 44
70% 220 225 55
50% 263 268 51
40% 264 269 62
30% 264 269 81
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 215 220 31
95% 215 220 44
90% 219 224 45
70% 219 224 56
50% 301 306 34
40% 303 308 44
30% 360 365 40
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 88 90 167
95% 218 220 48
90% 218 220 52
70% 218 220 63
50% 298 300 43
40% 298 300 52
30% 354 356 48
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 216 218 36
95% 217 219 51
90% 217 219 55
70% 217 219 67
50% 304 306 33
40% 304 306 43
30% 358 360 42
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 218 220 34
95% 218 220 47
90% 218 220 51
70% 218 220 62
50% 298 300 42
40% 359 361 30
30% 360 362 41
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 181 183 46
95% 225 227 38
90% 225 227 42
70% 309 311 23
50% 310 312 32
40% 310 312 42
30% 310 312 57
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 219 221 32
95% 219 221 45
90% 219 221 49
70% 219 221 60
50% 303 305 38
40% 303 305 50
30% 359 361 47
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 217 219 35
95% 217 219 52
90% 217 219 56
70% 218 220 65
50% 218 220 92
40% 218 220 113
30% 218 220 126
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 219 223 29
95% 224 228 26
90% 224 228 31
70% 224 228 43
50% 308 313 29
40% 309 314 40
30% 309 314 55
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S16 protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 5 12688
95% 217 220 49
90% 217 220 53
70% 217 220 64
50% 217 220 91
40% 218 221 112
30% 300 303 70
Entity #2: Chains: B,C - tRNA(Phe) rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 78 80 224
95% 212 214 56
90% 216 218 58
70% 216 218 69
50% 216 218 94
40% 216 218 116
30% 216 218 128
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 49 525
95% 192 194 64
90% 192 194 66
70% 192 194 79
50% 192 194 111
40% 192 194 130
30% 192 194 150
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 219 223 27
95% 219 223 41
90% 219 223 46
70% 219 223 57
50% 299 303 37
40% 299 303 48
30% 299 303 67
Entity #23: Chains: W - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 49 367
95% 217 219 50
90% 217 219 54
70% 217 219 66
50% 217 219 93
40% 217 219 114
30% 217 219 127
Entity #24: Chains: X - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 208 210 40
95% 208 210 59
90% 208 210 62
70% 208 210 73
50% 208 210 98
40% 208 210 120
30% 208 210 133
Entity #3: Chains: D - tRNA(Phe) rna, length: 74 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: 1 - MESSENGER RNA MV36 rna, length: 36 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 218 220 30
95% 219 221 42
90% 219 221 47
70% 219 221 58
50% 297 299 41
40% 298 300 51
30% 298 300 69
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 191 193 45
95% 191 193 65
90% 191 193 67
70% 191 193 80
50% 234 236 78
40% 234 236 99
30% 234 236 119
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 8 7187
95% 219 221 43
90% 219 221 48
70% 219 221 59
50% 298 300 39
40% 299 301 49
30% 299 301 68
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 218 220 33
95% 218 220 46
90% 218 220 50
70% 218 220 61
50% 299 304 36
40% 299 304 47
30% 301 306 65
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 221 225 24
95% 227 231 24
90% 227 231 29
70% 227 231 41
50% 227 231 83
40% 227 231 105
30% 266 270 79
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.