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The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY
Sequence Clustering and Redundancy Reduction Results
1JGP
Sequence Clusters for the Sequence Entities in PDB 1JGP
Entity #1: Chains: A - 30S 16S ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 197 202 18
95% 198 203 32
90% 198 203 34
70% 198 203 45
50% 240 245 53
40% 241 246 70
30% 241 246 94
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 193 198 20
95% 193 198 36
90% 197 202 35
70% 197 202 46
50% 275 280 36
40% 277 282 46
30% 330 335 44
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 88 90 156
95% 196 198 41
90% 196 198 43
70% 196 198 55
50% 272 274 41
40% 272 274 54
30% 324 326 51
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 194 196 28
95% 195 197 44
90% 195 197 46
70% 195 197 58
50% 278 280 35
40% 278 280 45
30% 329 331 46
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 196 198 24
95% 196 198 40
90% 196 198 42
70% 196 198 54
50% 272 274 42
40% 328 330 35
30% 328 330 47
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 163 165 35
95% 203 205 31
90% 203 205 33
70% 284 286 24
50% 284 286 34
40% 284 286 44
30% 284 286 69
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 197 199 21
95% 197 199 37
90% 197 199 39
70% 197 199 51
50% 277 279 39
40% 277 279 51
30% 329 331 49
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 195 197 25
95% 195 197 45
90% 195 197 47
70% 195 197 59
50% 195 197 92
40% 195 197 114
30% 195 197 137
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 197 201 19
95% 202 206 30
90% 202 206 32
70% 202 206 43
50% 282 287 33
40% 282 287 43
30% 282 287 68
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S16 protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 5 12285
95% 195 198 42
90% 195 198 44
70% 195 198 56
50% 195 198 90
40% 195 198 112
30% 274 277 75
Entity #2: Chains: B,C - tRNA(Phe) rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 78 80 222
95% 190 192 49
90% 194 196 48
70% 194 196 60
50% 194 196 93
40% 194 196 116
30% 194 196 139
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 49 505
95% 172 174 71
90% 172 174 75
70% 172 174 88
50% 172 174 128
40% 172 174 146
30% 172 174 164
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 172 176 45
95% 172 176 67
90% 172 176 70
70% 172 176 83
50% 273 277 38
40% 273 277 48
30% 273 277 72
Entity #23: Chains: W - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 49 355
95% 195 197 43
90% 195 197 45
70% 195 197 57
50% 195 197 91
40% 195 197 113
30% 195 197 136
Entity #24: Chains: X - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 186 188 31
95% 186 188 51
90% 186 188 54
70% 186 188 66
50% 186 188 111
40% 186 188 133
30% 186 188 153
Entity #3: Chains: D - tRNA(Phe) rna, length: 74 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: 1 - MESSENGER RNA MV36 rna, length: 36 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 196 198 22
95% 197 199 34
90% 197 199 37
70% 197 199 48
50% 197 199 88
40% 272 274 53
30% 272 274 74
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 171 173 48
95% 171 173 72
90% 171 173 76
70% 171 173 90
50% 211 213 75
40% 211 213 102
30% 211 213 122
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 8 6928
95% 197 199 35
90% 197 199 38
70% 197 199 49
50% 272 274 40
40% 273 275 52
30% 273 275 73
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 196 198 23
95% 196 198 39
90% 196 198 41
70% 196 198 53
50% 273 278 37
40% 273 278 47
30% 275 280 71
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 199 203 17
95% 205 209 29
90% 205 209 31
70% 205 209 42
50% 205 209 80
40% 205 209 106
30% 243 247 87
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.