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An Information Portal to 107049 Biological Macromolecular Structures

The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY
Sequence Clustering and Redundancy Reduction Results
1JGP
Sequence Clusters for the Sequence Entities in PDB 1JGP
Entity #1: Chains: A - 30S 16S ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 195 200 18
95% 196 201 33
90% 196 201 35
70% 196 201 46
50% 237 242 55
40% 238 243 71
30% 238 243 95
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 191 196 22
95% 191 196 37
90% 195 200 36
70% 195 200 47
50% 271 276 36
40% 273 278 46
30% 326 331 45
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 88 90 140
95% 194 196 43
90% 194 196 45
70% 194 196 56
50% 268 270 41
40% 268 270 55
30% 320 322 50
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 192 194 28
95% 193 195 46
90% 193 195 48
70% 193 195 59
50% 274 276 35
40% 274 276 45
30% 325 327 46
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 194 196 26
95% 194 196 42
90% 194 196 44
70% 194 196 55
50% 268 270 42
40% 324 326 35
30% 324 326 47
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 163 165 35
95% 201 203 31
90% 201 203 33
70% 280 282 24
50% 280 282 34
40% 280 282 44
30% 280 282 69
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 195 197 23
95% 195 197 38
90% 195 197 40
70% 195 197 52
50% 273 275 39
40% 273 275 52
30% 325 327 48
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 193 195 27
95% 193 195 47
90% 193 195 49
70% 193 195 60
50% 193 195 93
40% 193 195 116
30% 193 195 139
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 195 199 19
95% 200 204 30
90% 200 204 32
70% 200 204 44
50% 278 283 33
40% 278 283 43
30% 278 283 68
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S16 protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 5 12209
95% 193 196 44
90% 193 196 46
70% 193 196 57
50% 193 196 90
40% 193 196 114
30% 270 273 77
Entity #2: Chains: B,C - tRNA(Phe) rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 78 80 221
95% 188 190 49
90% 192 194 50
70% 192 194 61
50% 192 194 94
40% 192 194 117
30% 192 194 141
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 49 499
95% 170 172 70
90% 170 172 74
70% 170 172 88
50% 170 172 125
40% 170 172 146
30% 170 172 165
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 170 174 47
95% 170 174 69
90% 170 174 73
70% 170 174 87
50% 269 273 38
40% 269 273 50
30% 269 273 73
Entity #23: Chains: W - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 49 354
95% 193 195 45
90% 193 195 47
70% 193 195 58
50% 193 195 92
40% 193 195 115
30% 193 195 138
Entity #24: Chains: X - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 184 186 32
95% 184 186 51
90% 184 186 54
70% 184 186 66
50% 184 186 111
40% 184 186 134
30% 184 186 152
Entity #3: Chains: D - tRNA(Phe) rna, length: 74 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: 1 - MESSENGER RNA MV36 rna, length: 36 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 194 196 24
95% 195 197 35
90% 195 197 38
70% 195 197 50
50% 195 197 89
40% 268 270 54
30% 268 270 76
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 169 171 48
95% 169 171 73
90% 169 171 76
70% 169 171 90
50% 208 210 77
40% 208 210 101
30% 208 210 122
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 8 6887
95% 195 197 36
90% 195 197 39
70% 195 197 51
50% 268 270 40
40% 269 271 53
30% 269 271 75
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 194 196 25
95% 194 196 40
90% 194 196 42
70% 194 196 54
50% 269 274 37
40% 269 274 49
30% 271 276 71
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 197 201 17
95% 203 207 29
90% 203 207 31
70% 203 207 42
50% 203 207 82
40% 203 207 108
30% 240 244 91
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.