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An Information Portal to 105025 Biological Macromolecular Structures

The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY
Sequence Clustering and Redundancy Reduction Results
1JGP
Sequence Clusters for the Sequence Entities in PDB 1JGP
Entity #1: Chains: A - 30S 16S ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 267 272 19
95% 268 273 36
90% 268 273 38
70% 268 273 49
50% 318 323 56
40% 319 324 73
30% 319 324 96
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 263 268 21
95% 263 268 40
90% 267 272 39
70% 267 272 50
50% 379 384 35
40% 381 386 47
30% 454 459 43
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 111 113 150
95% 266 268 44
90% 266 268 46
70% 266 268 56
50% 376 378 40
40% 376 378 54
30% 448 450 50
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 263 265 27
95% 265 267 47
90% 265 267 49
70% 265 267 59
50% 382 384 34
40% 382 384 46
30% 387 389 65
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 266 268 25
95% 266 268 43
90% 266 268 45
70% 266 268 55
50% 376 378 41
40% 452 454 34
30% 452 454 44
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 235 237 35
95% 273 275 35
90% 273 275 37
70% 388 390 24
50% 388 390 33
40% 388 390 45
30% 388 390 68
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 267 269 22
95% 267 269 41
90% 267 269 43
70% 267 269 53
50% 378 380 38
40% 378 380 51
30% 450 452 47
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 265 267 26
95% 265 267 48
90% 265 267 50
70% 265 267 60
50% 265 267 93
40% 265 267 119
30% 265 267 141
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 267 271 20
95% 272 276 32
90% 272 276 34
70% 272 276 47
50% 386 391 32
40% 386 391 43
30% 386 391 67
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S16 protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 5 11837
95% 265 268 45
90% 265 268 47
70% 265 268 57
50% 265 268 91
40% 265 268 117
30% 375 378 76
Entity #2: Chains: B,C - tRNA(Phe) rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 92 221
95% 260 262 49
90% 264 266 51
70% 264 266 61
50% 264 266 94
40% 264 266 120
30% 264 266 142
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 49 486
95% 230 232 61
90% 230 232 64
70% 230 232 78
50% 230 232 115
40% 230 232 139
30% 230 232 160
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 230 234 37
95% 230 234 59
90% 230 234 63
70% 230 234 77
50% 377 381 37
40% 377 381 49
30% 377 381 72
Entity #23: Chains: W - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 59 61 363
95% 265 267 46
90% 265 267 48
70% 265 267 58
50% 265 267 92
40% 265 267 118
30% 265 267 140
Entity #24: Chains: X - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 247 249 34
95% 247 249 53
90% 247 249 55
70% 247 249 67
50% 247 249 104
40% 247 249 132
30% 247 249 151
Entity #3: Chains: D - tRNA(Phe) rna, length: 74 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: 1 - MESSENGER RNA MV36 rna, length: 36 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 266 268 23
95% 267 269 38
90% 267 269 41
70% 267 269 51
50% 267 269 90
40% 376 378 53
30% 376 378 75
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 228 230 38
95% 228 230 63
90% 228 230 66
70% 228 230 80
50% 291 293 73
40% 291 293 99
30% 291 293 119
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 8 6647
95% 267 269 39
90% 267 269 42
70% 267 269 52
50% 376 378 39
40% 377 379 52
30% 377 379 74
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 266 268 24
95% 266 268 42
90% 266 268 44
70% 266 268 54
50% 377 382 36
40% 377 382 48
30% 379 384 71
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 269 273 18
95% 275 279 29
90% 275 279 30
70% 275 279 44
50% 275 279 84
40% 275 279 106
30% 324 328 94
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.