Sequence Similarity Clusters for the Entities in PDB 1JGO

Entity #1 | Chains: A
30S 16S ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 253 259 27
95 % 254 260 37
90 % 254 260 42
70 % 254 260 51
50 % 306 312 54
40 % 307 313 68
30 % 307 313 88
Entity #11 | Chains: K
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 249 255 31
95 % 249 255 42
90 % 253 259 43
70 % 253 259 52
50 % 355 361 29
40 % 357 363 39
30 % 434 440 33
Entity #12 | Chains: L
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 91 198
95 % 252 255 46
90 % 252 255 51
70 % 252 255 60
50 % 352 355 36
40 % 352 355 46
30 % 428 431 40
Entity #13 | Chains: M
30S RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 250 253 36
95 % 251 254 49
90 % 251 254 54
70 % 251 254 64
50 % 358 361 28
40 % 358 361 38
30 % 431 434 36
Entity #14 | Chains: N
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 252 255 34
95 % 252 255 45
90 % 252 255 50
70 % 252 255 59
50 % 352 355 35
40 % 433 436 20
30 % 434 437 34
Entity #15 | Chains: O
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 204 207 47
95 % 259 262 36
90 % 259 262 41
70 % 363 366 21
50 % 364 367 27
40 % 364 367 37
30 % 364 367 57
Entity #16 | Chains: P
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 253 256 32
95 % 253 256 43
90 % 253 256 48
70 % 253 256 57
50 % 357 360 32
40 % 357 360 44
30 % 432 435 39
Entity #17 | Chains: Q
30S RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 251 254 35
95 % 251 254 50
90 % 251 254 55
70 % 252 255 62
50 % 252 255 87
40 % 252 255 108
30 % 252 255 120
Entity #18 | Chains: R
30S RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 253 258 29
95 % 258 263 35
90 % 258 263 40
70 % 258 263 50
50 % 362 368 26
40 % 363 369 36
30 % 363 369 56
Entity #19 | Chains: S
30S RIBOSOMAL PROTEIN S16 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 14155
95 % 251 255 47
90 % 251 255 52
70 % 251 255 61
50 % 251 255 86
40 % 252 256 107
30 % 354 358 62
Entity #2 | Chains: B,C
tRNA(Phe) rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: T
30S RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 84 87 224
95 % 246 249 52
90 % 250 253 56
70 % 250 253 65
50 % 250 253 89
40 % 250 253 111
30 % 250 253 124
Entity #21 | Chains: U
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 51 610
95 % 217 220 64
90 % 217 220 69
70 % 217 220 79
50 % 217 220 110
40 % 217 220 132
30 % 217 220 142
Entity #22 | Chains: V
30S RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 253 258 28
95 % 253 258 38
90 % 253 258 44
70 % 253 258 53
50 % 353 358 31
40 % 353 358 41
30 % 353 358 59
Entity #23 | Chains: W
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 51 375
95 % 251 254 48
90 % 251 254 53
70 % 251 254 63
50 % 251 254 88
40 % 251 254 109
30 % 251 254 121
Entity #24 | Chains: X
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 242 245 39
95 % 242 245 55
90 % 242 245 60
70 % 242 245 70
50 % 242 245 94
40 % 242 245 118
30 % 242 245 131
Entity #3 | Chains: D
tRNA(Phe) rna, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: 1
MESSENGER RNA MK27 rna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: E
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 252 255 30
95 % 253 256 40
90 % 253 256 46
70 % 253 256 55
50 % 351 354 34
40 % 352 355 45
30 % 352 355 61
Entity #6 | Chains: F
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 216 219 45
95 % 216 219 65
90 % 216 219 70
70 % 216 219 80
50 % 272 275 80
40 % 272 275 100
30 % 272 275 112
Entity #7 | Chains: G
30S RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 8054
95 % 253 256 41
90 % 253 256 47
70 % 253 256 56
50 % 352 355 33
40 % 353 356 43
30 % 353 356 60
Entity #8 | Chains: H
30S RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 252 255 33
95 % 252 255 44
90 % 252 255 49
70 % 252 255 58
50 % 353 359 30
40 % 353 359 40
30 % 355 361 58
Entity #9 | Chains: I
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 255 260 25
95 % 261 266 34
90 % 261 266 37
70 % 261 266 46
50 % 261 266 84
40 % 261 266 103
30 % 307 312 79

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.