Sequence Similarity Clusters for the Entities in PDB 1JGO

Entity #1 | Chains: A
30S 16S ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 237 243 14
95 % 238 244 25
90 % 238 244 29
70 % 238 244 40
50 % 283 289 50
40 % 284 290 62
30 % 284 290 83
Entity #11 | Chains: K
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 233 239 19
95 % 233 239 31
90 % 237 243 30
70 % 237 243 41
50 % 324 330 31
40 % 326 332 41
30 % 395 401 37
Entity #12 | Chains: L
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 87 90 190
95 % 236 239 35
90 % 236 239 40
70 % 236 239 49
50 % 321 324 39
40 % 321 324 49
30 % 389 392 47
Entity #13 | Chains: M
30S RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 234 237 25
95 % 235 238 38
90 % 235 238 43
70 % 235 238 53
50 % 327 330 30
40 % 327 330 40
30 % 393 396 41
Entity #14 | Chains: N
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 236 239 23
95 % 236 239 34
90 % 236 239 39
70 % 236 239 48
50 % 321 324 38
40 % 394 397 27
30 % 395 398 39
Entity #15 | Chains: O
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 191 194 42
95 % 243 246 22
90 % 243 246 27
70 % 332 335 23
50 % 333 336 29
40 % 333 336 39
30 % 333 336 56
Entity #16 | Chains: P
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 237 240 20
95 % 237 240 32
90 % 237 240 37
70 % 237 240 46
50 % 326 329 35
40 % 326 329 46
30 % 394 397 46
Entity #17 | Chains: Q
30S RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 235 238 24
95 % 235 238 39
90 % 235 238 44
70 % 236 239 51
50 % 236 239 82
40 % 236 239 108
30 % 236 239 124
Entity #18 | Chains: R
30S RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 237 242 16
95 % 242 247 21
90 % 242 247 26
70 % 242 247 37
50 % 331 337 27
40 % 332 338 38
30 % 332 338 54
Entity #19 | Chains: S
30S RIBOSOMAL PROTEIN S16 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 13376
95 % 235 239 36
90 % 235 239 41
70 % 235 239 50
50 % 235 239 81
40 % 236 240 106
30 % 323 327 65
Entity #2 | Chains: B,C
tRNA(Phe) rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: T
30S RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 81 84 225
95 % 230 233 40
90 % 234 237 45
70 % 234 237 54
50 % 234 237 87
40 % 234 237 113
30 % 234 237 128
Entity #21 | Chains: U
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 49 566
95 % 202 205 63
90 % 202 205 66
70 % 202 205 75
50 % 202 205 109
40 % 202 205 129
30 % 202 205 145
Entity #22 | Chains: V
30S RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 237 242 15
95 % 237 242 26
90 % 237 242 31
70 % 237 242 42
50 % 322 327 34
40 % 322 327 44
30 % 322 327 60
Entity #23 | Chains: W
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 50 370
95 % 235 238 37
90 % 235 238 42
70 % 235 238 52
50 % 235 238 83
40 % 235 238 110
30 % 235 238 126
Entity #24 | Chains: X
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 226 229 39
95 % 226 229 54
90 % 226 229 58
70 % 226 229 69
50 % 226 229 97
40 % 226 229 118
30 % 226 229 133
Entity #3 | Chains: D
tRNA(Phe) rna, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: 1
MESSENGER RNA MK27 rna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: E
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 236 239 17
95 % 237 240 27
90 % 237 240 33
70 % 237 240 43
50 % 320 323 37
40 % 321 324 47
30 % 321 324 63
Entity #6 | Chains: F
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 201 204 43
95 % 201 204 64
90 % 201 204 67
70 % 201 204 76
50 % 249 252 68
40 % 249 252 93
30 % 249 252 110
Entity #7 | Chains: G
30S RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 7599
95 % 237 240 28
90 % 237 240 34
70 % 237 240 44
50 % 321 324 36
40 % 322 325 45
30 % 322 325 62
Entity #8 | Chains: H
30S RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 236 239 22
95 % 236 239 33
90 % 236 239 38
70 % 236 239 47
50 % 322 328 33
40 % 322 328 43
30 % 324 330 59
Entity #9 | Chains: I
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 239 244 13
95 % 245 250 20
90 % 245 250 25
70 % 245 250 35
50 % 245 250 70
40 % 245 250 94
30 % 284 289 80

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.