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The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY
Sequence Clustering and Redundancy Reduction Results
1JGO
Sequence Clusters for the Sequence Entities in PDB 1JGO
Entity #1: Chains: A - 30S 16S ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 218 224 26
95% 219 225 40
90% 219 225 44
70% 219 225 55
50% 262 268 51
40% 263 269 62
30% 263 269 81
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 214 220 31
95% 214 220 44
90% 218 224 45
70% 218 224 56
50% 300 306 34
40% 302 308 44
30% 359 365 40
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 87 90 167
95% 217 220 48
90% 217 220 52
70% 217 220 63
50% 297 300 43
40% 297 300 52
30% 353 356 48
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 215 218 36
95% 216 219 51
90% 216 219 55
70% 216 219 67
50% 303 306 33
40% 303 306 43
30% 357 360 42
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 217 220 34
95% 217 220 47
90% 217 220 51
70% 217 220 62
50% 297 300 42
40% 358 361 30
30% 359 362 41
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 180 183 46
95% 224 227 38
90% 224 227 42
70% 308 311 23
50% 309 312 32
40% 309 312 42
30% 309 312 57
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 218 221 32
95% 218 221 45
90% 218 221 49
70% 218 221 60
50% 302 305 38
40% 302 305 50
30% 358 361 47
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 216 219 35
95% 216 219 52
90% 216 219 56
70% 217 220 65
50% 217 220 92
40% 217 220 113
30% 217 220 126
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 218 223 29
95% 223 228 26
90% 223 228 31
70% 223 228 43
50% 307 313 29
40% 308 314 40
30% 308 314 55
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S16 protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 5 12688
95% 216 220 49
90% 216 220 53
70% 216 220 64
50% 216 220 91
40% 217 221 112
30% 299 303 70
Entity #2: Chains: B,C - tRNA(Phe) rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 77 80 224
95% 211 214 56
90% 215 218 58
70% 215 218 69
50% 215 218 94
40% 215 218 116
30% 215 218 128
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 49 525
95% 191 194 64
90% 191 194 66
70% 191 194 79
50% 191 194 111
40% 191 194 130
30% 191 194 150
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 218 223 27
95% 218 223 41
90% 218 223 46
70% 218 223 57
50% 298 303 37
40% 298 303 48
30% 298 303 67
Entity #23: Chains: W - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 49 367
95% 216 219 50
90% 216 219 54
70% 216 219 66
50% 216 219 93
40% 216 219 114
30% 216 219 127
Entity #24: Chains: X - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 207 210 40
95% 207 210 59
90% 207 210 62
70% 207 210 73
50% 207 210 98
40% 207 210 120
30% 207 210 133
Entity #3: Chains: D - tRNA(Phe) rna, length: 74 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: 1 - MESSENGER RNA MK27 rna, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 217 220 30
95% 218 221 42
90% 218 221 47
70% 218 221 58
50% 296 299 41
40% 297 300 51
30% 297 300 69
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 190 193 45
95% 190 193 65
90% 190 193 67
70% 190 193 80
50% 233 236 78
40% 233 236 99
30% 233 236 119
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 8 7187
95% 218 221 43
90% 218 221 48
70% 218 221 59
50% 297 300 39
40% 298 301 49
30% 298 301 68
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 217 220 33
95% 217 220 46
90% 217 220 50
70% 217 220 61
50% 298 304 36
40% 298 304 47
30% 300 306 65
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 220 225 24
95% 226 231 24
90% 226 231 29
70% 226 231 41
50% 226 231 83
40% 226 231 105
30% 265 270 79
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.