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The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY
Sequence Clustering and Redundancy Reduction Results
1JGO
Sequence Clusters for the Sequence Entities in PDB 1JGO
Entity #1: Chains: A - 30S 16S ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 189 195 20
95% 190 196 36
90% 190 196 38
70% 190 196 49
50% 231 237 56
40% 232 238 74
30% 232 238 96
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 185 191 22
95% 185 191 39
90% 189 195 39
70% 189 195 50
50% 265 271 35
40% 267 273 47
30% 317 323 44
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 89 144
95% 188 191 44
90% 188 191 46
70% 188 191 57
50% 262 265 40
40% 262 265 55
30% 311 314 52
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 186 189 28
95% 187 190 47
90% 187 190 50
70% 187 190 60
50% 268 271 34
40% 268 271 46
30% 273 276 66
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 188 191 26
95% 188 191 43
90% 188 191 45
70% 188 191 56
50% 262 265 41
40% 315 318 35
30% 315 318 45
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 157 160 35
95% 195 198 34
90% 195 198 36
70% 274 277 24
50% 274 277 33
40% 274 277 45
30% 274 277 69
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 189 192 23
95% 189 192 40
90% 189 192 43
70% 189 192 54
50% 267 270 38
40% 267 270 51
30% 316 319 49
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 187 190 27
95% 187 190 48
90% 187 190 51
70% 187 190 61
50% 187 190 94
40% 187 190 119
30% 187 190 142
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 189 194 21
95% 194 199 33
90% 194 199 35
70% 194 199 47
50% 272 278 32
40% 272 278 43
30% 272 278 67
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S16 protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 5 12030
95% 187 191 45
90% 187 191 48
70% 187 191 58
50% 187 191 92
40% 187 191 117
30% 264 268 78
Entity #2: Chains: B,C - tRNA(Phe) rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 76 79 223
95% 182 185 49
90% 186 189 52
70% 186 189 62
50% 186 189 95
40% 186 189 120
30% 186 189 143
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 49 494
95% 165 168 61
90% 165 168 64
70% 165 168 80
50% 165 168 117
40% 165 168 140
30% 165 168 163
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 165 170 37
95% 165 170 59
90% 165 170 63
70% 165 170 78
50% 263 268 37
40% 263 268 50
30% 263 268 74
Entity #23: Chains: W - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 45 48 363
95% 187 190 46
90% 187 190 49
70% 187 190 59
50% 187 190 93
40% 187 190 118
30% 187 190 141
Entity #24: Chains: X - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 178 181 34
95% 178 181 53
90% 178 181 55
70% 178 181 69
50% 178 181 105
40% 178 181 132
30% 178 181 151
Entity #3: Chains: D - tRNA(Phe) rna, length: 74 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: 1 - MESSENGER RNA MK27 rna, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 188 191 24
95% 189 192 37
90% 189 192 41
70% 189 192 52
50% 189 192 91
40% 262 265 54
30% 262 265 77
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 164 167 38
95% 164 167 63
90% 164 167 66
70% 164 167 82
50% 203 206 77
40% 203 206 101
30% 203 206 122
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 8 6767
95% 189 192 38
90% 189 192 42
70% 189 192 53
50% 262 265 39
40% 263 266 52
30% 263 266 76
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 188 191 25
95% 188 191 42
90% 188 191 44
70% 188 191 55
50% 263 269 36
40% 263 269 49
30% 265 271 73
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 191 196 19
95% 197 202 30
90% 197 202 31
70% 197 202 45
50% 197 202 84
40% 197 202 108
30% 234 239 93
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.