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The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY
Sequence Clustering and Redundancy Reduction Results
1JGO
Sequence Clusters for the Sequence Entities in PDB 1JGO
Entity #1: Chains: A - 30S 16S ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 218 224 26
95% 219 225 38
90% 219 225 42
70% 219 225 52
50% 262 268 49
40% 263 269 60
30% 263 269 80
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 214 220 31
95% 214 220 43
90% 218 224 43
70% 218 224 53
50% 298 304 33
40% 300 306 44
30% 356 362 40
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 87 90 160
95% 217 220 47
90% 217 220 51
70% 217 220 61
50% 295 298 43
40% 295 298 52
30% 350 353 47
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 215 218 36
95% 216 219 50
90% 216 219 54
70% 216 219 65
50% 301 304 31
40% 301 304 42
30% 354 357 42
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 217 220 34
95% 217 220 46
90% 217 220 50
70% 217 220 60
50% 295 298 42
40% 355 358 31
30% 356 359 41
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 180 183 46
95% 224 227 27
90% 224 227 32
70% 306 309 22
50% 307 310 30
40% 307 310 41
30% 307 310 57
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 218 221 32
95% 218 221 44
90% 218 221 48
70% 218 221 58
50% 300 303 39
40% 300 303 50
30% 355 358 46
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 216 219 35
95% 216 219 51
90% 216 219 55
70% 217 220 63
50% 217 220 92
40% 217 220 113
30% 217 220 126
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 218 223 28
95% 223 228 25
90% 223 228 29
70% 223 228 41
50% 305 311 29
40% 306 312 39
30% 306 312 55
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S16 protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 5 12531
95% 216 220 48
90% 216 220 52
70% 216 220 62
50% 216 220 91
40% 217 221 112
30% 297 301 69
Entity #2: Chains: B,C - tRNA(Phe) rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 77 80 223
95% 211 214 56
90% 215 218 57
70% 215 218 67
50% 215 218 94
40% 215 218 116
30% 215 218 128
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 49 517
95% 191 194 64
90% 191 194 66
70% 191 194 78
50% 191 194 110
40% 191 194 129
30% 191 194 148
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 218 223 27
95% 218 223 40
90% 218 223 45
70% 218 223 55
50% 296 301 36
40% 296 301 47
30% 296 301 66
Entity #23: Chains: W - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 49 364
95% 216 219 49
90% 216 219 53
70% 216 219 64
50% 216 219 93
40% 216 219 114
30% 216 219 127
Entity #24: Chains: X - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 207 210 39
95% 207 210 59
90% 207 210 62
70% 207 210 72
50% 207 210 98
40% 207 210 120
30% 207 210 133
Entity #3: Chains: D - tRNA(Phe) rna, length: 74 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: 1 - MESSENGER RNA MK27 rna, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 217 220 30
95% 218 221 41
90% 218 221 46
70% 218 221 56
50% 294 297 41
40% 295 298 51
30% 295 298 68
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 190 193 45
95% 190 193 65
90% 190 193 67
70% 190 193 79
50% 231 234 78
40% 231 234 99
30% 231 234 118
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 8 7099
95% 218 221 42
90% 218 221 47
70% 218 221 57
50% 295 298 40
40% 296 299 49
30% 296 299 67
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 217 220 33
95% 217 220 45
90% 217 220 49
70% 217 220 59
50% 296 302 35
40% 296 302 46
30% 298 304 64
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 220 225 24
95% 226 231 23
90% 226 231 28
70% 226 231 39
50% 226 231 82
40% 226 231 104
30% 265 270 77
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.