1JGO

The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY


Sequence Similarity Clusters for the Entities in PDB 1JGO

Entity #1 | Chains: A
30S 16S ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 267 273 26
95 % 268 274 37
90 % 268 274 41
70 % 268 274 51
50 % 330 336 65
40 % 333 339 75
30 % 333 339 89
Entity #11 | Chains: K
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 263 269 32
95 % 263 269 43
90 % 267 273 42
70 % 267 273 52
50 % 388 394 26
40 % 392 398 36
30 % 494 500 28
Entity #12 | Chains: L
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 91 202
95 % 266 269 48
90 % 266 269 51
70 % 266 269 61
50 % 385 388 35
40 % 385 388 45
30 % 485 488 33
Entity #13 | Chains: M
30S RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 264 267 37
95 % 265 268 51
90 % 265 268 54
70 % 265 268 65
50 % 391 394 25
40 % 391 394 37
30 % 487 490 29
Entity #14 | Chains: N
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 266 269 35
95 % 266 269 47
90 % 266 269 50
70 % 266 269 60
50 % 385 388 34
40 % 484 487 18
30 % 484 487 31
Entity #15 | Chains: O
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 214 217 48
95 % 273 276 36
90 % 273 276 40
70 % 398 401 20
50 % 400 403 23
40 % 400 403 34
30 % 400 403 55
Entity #16 | Chains: P
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 267 270 33
95 % 267 270 44
90 % 267 270 48
70 % 267 270 57
50 % 390 393 32
40 % 390 393 44
30 % 488 491 32
Entity #17 | Chains: Q
30S RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 265 268 36
95 % 265 268 52
90 % 265 268 55
70 % 267 270 58
50 % 267 270 87
40 % 267 270 108
30 % 267 270 120
Entity #18 | Chains: R
30S RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 267 272 28
95 % 272 277 35
90 % 272 277 39
70 % 272 277 50
50 % 395 401 24
40 % 398 404 33
30 % 398 404 54
Entity #19 | Chains: S
30S RIBOSOMAL PROTEIN S16 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 14763
95 % 265 269 49
90 % 265 269 52
70 % 265 269 62
50 % 267 271 86
40 % 267 271 106
30 % 385 389 63
Entity #2 | Chains: B,C
tRNA(Phe) rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: T
30S RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 84 87 234
95 % 260 263 53
90 % 264 267 56
70 % 264 267 66
50 % 264 267 90
40 % 264 267 111
30 % 264 267 123
Entity #21 | Chains: U
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 51 647
95 % 231 234 62
90 % 231 234 66
70 % 231 234 77
50 % 231 234 103
40 % 231 234 129
30 % 231 234 140
Entity #22 | Chains: V
30S RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 267 272 27
95 % 267 272 40
90 % 267 272 45
70 % 267 272 54
50 % 388 393 28
40 % 388 393 39
30 % 388 393 58
Entity #23 | Chains: W
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 51 460
95 % 265 268 50
90 % 265 268 53
70 % 265 268 64
50 % 265 268 89
40 % 265 268 110
30 % 265 268 122
Entity #24 | Chains: X
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 256 259 41
95 % 256 259 56
90 % 256 259 59
70 % 256 259 69
50 % 256 259 94
40 % 256 259 116
30 % 256 259 129
Entity #3 | Chains: D
tRNA(Phe) rna, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: 1
MESSENGER RNA MK27 rna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: E
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 266 269 31
95 % 267 270 41
90 % 267 270 46
70 % 267 270 55
50 % 384 387 33
40 % 387 390 42
30 % 387 390 61
Entity #6 | Chains: F
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 230 233 45
95 % 230 233 63
90 % 230 233 67
70 % 230 233 78
50 % 298 301 78
40 % 298 301 96
30 % 298 301 113
Entity #7 | Chains: G
30S RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 8431
95 % 267 270 42
90 % 267 270 47
70 % 267 270 56
50 % 386 389 31
40 % 389 392 40
30 % 389 392 60
Entity #8 | Chains: H
30S RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 266 269 34
95 % 266 269 46
90 % 266 269 49
70 % 266 269 59
50 % 387 393 29
40 % 387 393 41
30 % 389 395 57
Entity #9 | Chains: I
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 269 274 24
95 % 275 280 33
90 % 275 280 38
70 % 275 280 49
50 % 275 280 83
40 % 275 280 102
30 % 329 334 87

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.