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The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY
Sequence Clustering and Redundancy Reduction Results
1JGO
Sequence Clusters for the Sequence Entities in PDB 1JGO
Entity #1: Chains: A - 30S 16S ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 253 259 20
95% 254 260 37
90% 254 260 39
70% 254 260 51
50% 302 308 57
40% 303 309 74
30% 303 309 97
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 249 255 23
95% 249 255 41
90% 253 259 40
70% 253 259 52
50% 363 369 36
40% 365 371 49
30% 402 408 50
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 110 113 134
95% 252 255 45
90% 252 255 48
70% 252 255 60
50% 360 363 41
40% 360 363 56
30% 396 399 59
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 249 252 29
95% 251 254 48
90% 251 254 51
70% 251 254 63
50% 366 369 34
40% 366 369 48
30% 371 374 67
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 252 255 27
95% 252 255 44
90% 252 255 47
70% 252 255 59
50% 360 363 42
40% 400 403 39
30% 400 403 53
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 221 224 37
95% 259 262 36
90% 259 262 38
70% 372 375 24
50% 372 375 33
40% 372 375 47
30% 372 375 71
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 253 256 24
95% 253 256 42
90% 253 256 45
70% 253 256 57
50% 362 365 39
40% 362 365 53
30% 398 401 57
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 251 254 28
95% 251 254 49
90% 251 254 52
70% 251 254 64
50% 251 254 99
40% 251 254 124
30% 251 254 144
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 253 258 21
95% 258 263 35
90% 258 263 37
70% 258 263 48
50% 370 376 32
40% 370 376 45
30% 370 376 69
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S16 protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 5 11634
95% 251 255 46
90% 251 255 49
70% 251 255 61
50% 251 255 97
40% 251 255 122
30% 359 363 78
Entity #2: Chains: B,C - tRNA(Phe) rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 89 92 219
95% 246 249 51
90% 250 253 53
70% 250 253 65
50% 250 253 100
40% 250 253 126
30% 250 253 146
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 49 463
95% 218 221 64
90% 218 221 68
70% 218 221 81
50% 218 221 116
40% 218 221 144
30% 218 221 166
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 218 223 38
95% 218 223 63
90% 218 223 67
70% 218 223 80
50% 361 366 38
40% 361 366 52
30% 361 366 75
Entity #23: Chains: W - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 58 61 359
95% 251 254 47
90% 251 254 50
70% 251 254 62
50% 251 254 98
40% 251 254 123
30% 251 254 143
Entity #24: Chains: X - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 235 238 34
95% 235 238 55
90% 235 238 59
70% 235 238 71
50% 235 238 110
40% 235 238 133
30% 235 238 153
Entity #3: Chains: D - tRNA(Phe) rna, length: 74 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: 1 - MESSENGER RNA MK27 rna, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 252 255 25
95% 253 256 39
90% 253 256 43
70% 253 256 55
50% 253 256 96
40% 360 363 55
30% 360 363 77
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 216 219 39
95% 216 219 66
90% 216 219 70
70% 216 219 83
50% 279 282 81
40% 279 282 101
30% 279 282 123
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 8 6535
95% 253 256 40
90% 253 256 44
70% 253 256 56
50% 360 363 40
40% 361 364 54
30% 361 364 76
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 252 255 26
95% 252 255 43
90% 252 255 46
70% 252 255 58
50% 361 367 37
40% 361 367 51
30% 363 369 72
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 255 260 18
95% 261 266 34
90% 261 266 36
70% 261 266 47
50% 261 266 88
40% 261 266 112
30% 308 313 95
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.