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The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY
Sequence Clustering and Redundancy Reduction Results
1JGO
Sequence Clusters for the Sequence Entities in PDB 1JGO
Entity #1: Chains: A - 30S 16S ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 187 193 20
95% 188 194 36
90% 188 194 38
70% 188 194 50
50% 229 235 56
40% 230 236 73
30% 230 236 96
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 183 189 22
95% 183 189 40
90% 187 193 39
70% 187 193 51
50% 263 269 35
40% 265 271 46
30% 315 321 44
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 84 87 159
95% 186 189 44
90% 186 189 47
70% 186 189 57
50% 260 263 40
40% 260 263 55
30% 309 312 51
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 184 187 28
95% 185 188 47
90% 185 188 50
70% 185 188 60
50% 266 269 34
40% 266 269 45
30% 271 274 65
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 186 189 26
95% 186 189 43
90% 186 189 46
70% 186 189 56
50% 260 263 41
40% 313 316 35
30% 313 316 45
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 155 158 35
95% 193 196 35
90% 193 196 37
70% 272 275 24
50% 272 275 33
40% 272 275 44
30% 272 275 69
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 187 190 23
95% 187 190 41
90% 187 190 44
70% 187 190 54
50% 265 268 38
40% 265 268 51
30% 314 317 48
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 185 188 27
95% 185 188 48
90% 185 188 51
70% 185 188 61
50% 185 188 94
40% 185 188 119
30% 185 188 142
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 187 192 21
95% 192 197 33
90% 192 197 35
70% 192 197 47
50% 270 276 32
40% 270 276 43
30% 270 276 66
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S16 protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 5 11950
95% 185 189 45
90% 185 189 48
70% 185 189 58
50% 185 189 92
40% 185 189 117
30% 262 266 76
Entity #2: Chains: B,C - tRNA(Phe) rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 76 79 222
95% 180 183 49
90% 184 187 52
70% 184 187 62
50% 184 187 95
40% 184 187 120
30% 184 187 143
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 49 491
95% 165 168 61
90% 165 168 64
70% 165 168 80
50% 165 168 117
40% 165 168 139
30% 165 168 161
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 165 170 37
95% 165 170 59
90% 165 170 63
70% 165 170 78
50% 261 266 37
40% 261 266 50
30% 261 266 73
Entity #23: Chains: W - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 45 48 365
95% 185 188 46
90% 185 188 49
70% 185 188 59
50% 185 188 93
40% 185 188 118
30% 185 188 141
Entity #24: Chains: X - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 176 179 34
95% 176 179 54
90% 176 179 56
70% 176 179 69
50% 176 179 105
40% 176 179 132
30% 176 179 151
Entity #3: Chains: D - tRNA(Phe) rna, length: 74 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: 1 - MESSENGER RNA MK27 rna, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 186 189 24
95% 187 190 38
90% 187 190 42
70% 187 190 52
50% 187 190 91
40% 260 263 54
30% 260 263 75
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 163 166 38
95% 163 166 63
90% 163 166 66
70% 163 166 82
50% 202 205 77
40% 202 205 101
30% 202 205 120
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 8 6720
95% 187 190 39
90% 187 190 43
70% 187 190 53
50% 260 263 39
40% 261 264 52
30% 261 264 74
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 186 189 25
95% 186 189 42
90% 186 189 45
70% 186 189 55
50% 261 267 36
40% 261 267 49
30% 263 269 72
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 189 194 19
95% 195 200 29
90% 195 200 30
70% 195 200 45
50% 195 200 86
40% 195 200 108
30% 232 237 93
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.