1JGO

The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY


Sequence Similarity Clusters for the Entities in PDB 1JGO

Entity #1 | Chains: A
30S 16S ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 254 260 26
95 % 255 261 37
90 % 255 261 42
70 % 255 261 51
50 % 307 313 54
40 % 308 314 68
30 % 308 314 89
Entity #11 | Chains: K
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 250 256 31
95 % 250 256 42
90 % 254 260 43
70 % 254 260 52
50 % 356 362 29
40 % 358 364 39
30 % 437 443 33
Entity #12 | Chains: L
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 91 198
95 % 253 256 46
90 % 253 256 51
70 % 253 256 60
50 % 353 356 36
40 % 353 356 46
30 % 430 433 40
Entity #13 | Chains: M
30S RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 251 254 36
95 % 252 255 49
90 % 252 255 54
70 % 252 255 64
50 % 359 362 28
40 % 359 362 38
30 % 433 436 36
Entity #14 | Chains: N
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 253 256 34
95 % 253 256 45
90 % 253 256 50
70 % 253 256 59
50 % 353 356 35
40 % 435 438 20
30 % 436 439 34
Entity #15 | Chains: O
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 205 208 46
95 % 260 263 36
90 % 260 263 41
70 % 364 367 22
50 % 365 368 27
40 % 365 368 37
30 % 365 368 57
Entity #16 | Chains: P
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 254 257 32
95 % 254 257 43
90 % 254 257 48
70 % 254 257 57
50 % 358 361 32
40 % 358 361 43
30 % 434 437 39
Entity #17 | Chains: Q
30S RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 252 255 35
95 % 252 255 50
90 % 252 255 55
70 % 253 256 62
50 % 253 256 88
40 % 253 256 108
30 % 253 256 120
Entity #18 | Chains: R
30S RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 254 259 29
95 % 259 264 35
90 % 259 264 40
70 % 259 264 50
50 % 363 369 26
40 % 364 370 36
30 % 364 370 56
Entity #19 | Chains: S
30S RIBOSOMAL PROTEIN S16 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 14270
95 % 252 256 47
90 % 252 256 52
70 % 252 256 61
50 % 252 256 87
40 % 253 257 107
30 % 355 359 63
Entity #2 | Chains: B,C
tRNA(Phe) rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: T
30S RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 84 87 225
95 % 247 250 51
90 % 251 254 56
70 % 251 254 66
50 % 251 254 90
40 % 251 254 111
30 % 251 254 123
Entity #21 | Chains: U
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 51 616
95 % 218 221 64
90 % 218 221 69
70 % 218 221 79
50 % 218 221 111
40 % 218 221 132
30 % 218 221 143
Entity #22 | Chains: V
30S RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 254 259 27
95 % 254 259 38
90 % 254 259 44
70 % 254 259 53
50 % 354 359 31
40 % 354 359 41
30 % 354 359 59
Entity #23 | Chains: W
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 51 384
95 % 252 255 48
90 % 252 255 53
70 % 252 255 63
50 % 252 255 89
40 % 252 255 110
30 % 252 255 122
Entity #24 | Chains: X
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 243 246 39
95 % 243 246 54
90 % 243 246 59
70 % 243 246 69
50 % 243 246 95
40 % 243 246 118
30 % 243 246 131
Entity #3 | Chains: D
tRNA(Phe) rna, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: 1
MESSENGER RNA MK27 rna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: E
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 253 256 30
95 % 254 257 39
90 % 254 257 45
70 % 254 257 54
50 % 352 355 34
40 % 353 356 44
30 % 353 356 62
Entity #6 | Chains: F
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 217 220 45
95 % 217 220 65
90 % 217 220 70
70 % 217 220 80
50 % 273 276 78
40 % 273 276 100
30 % 273 276 112
Entity #7 | Chains: G
30S RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 8113
95 % 254 257 40
90 % 254 257 46
70 % 254 257 55
50 % 353 356 33
40 % 354 357 42
30 % 354 357 61
Entity #8 | Chains: H
30S RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 253 256 33
95 % 253 256 44
90 % 253 256 49
70 % 253 256 58
50 % 354 360 30
40 % 354 360 40
30 % 356 362 58
Entity #9 | Chains: I
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 256 261 25
95 % 262 267 34
90 % 262 267 37
70 % 262 267 46
50 % 262 267 84
40 % 262 267 103
30 % 308 313 77

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.