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The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY
Sequence Clustering and Redundancy Reduction Results
1JGO
Sequence Clusters for the Sequence Entities in PDB 1JGO
Entity #1: Chains: A - 30S 16S ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 197 203 18
95% 198 204 32
90% 198 204 34
70% 198 204 44
50% 240 246 54
40% 241 247 71
30% 241 247 94
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 193 199 21
95% 193 199 37
90% 197 203 35
70% 197 203 45
50% 276 282 36
40% 278 284 46
30% 332 338 44
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 87 90 158
95% 196 199 41
90% 196 199 43
70% 196 199 55
50% 273 276 41
40% 273 276 54
30% 326 329 50
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 194 197 29
95% 195 198 45
90% 195 198 47
70% 195 198 59
50% 279 282 35
40% 279 282 45
30% 330 333 46
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 196 199 25
95% 196 199 40
90% 196 199 42
70% 196 199 54
50% 273 276 42
40% 330 333 35
30% 330 333 45
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 163 166 36
95% 203 206 31
90% 203 206 33
70% 285 288 24
50% 285 288 34
40% 285 288 44
30% 285 288 69
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 197 200 22
95% 197 200 38
90% 197 200 40
70% 197 200 51
50% 278 281 39
40% 278 281 50
30% 331 334 49
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 195 198 26
95% 195 198 46
90% 195 198 48
70% 195 198 60
50% 195 198 92
40% 195 198 114
30% 195 198 138
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 197 202 20
95% 202 207 30
90% 202 207 32
70% 202 207 43
50% 283 289 33
40% 283 289 43
30% 283 289 67
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S16 protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 5 12348
95% 195 199 42
90% 195 199 44
70% 195 199 56
50% 195 199 89
40% 195 199 112
30% 275 279 76
Entity #2: Chains: B,C - tRNA(Phe) rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 77 80 222
95% 190 193 50
90% 194 197 49
70% 194 197 61
50% 194 197 93
40% 194 197 116
30% 194 197 139
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 49 508
95% 171 174 71
90% 171 174 75
70% 171 174 89
50% 171 174 130
40% 171 174 148
30% 171 174 164
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 197 202 19
95% 197 202 33
90% 197 202 36
70% 197 202 47
50% 274 279 38
40% 274 279 49
30% 274 279 73
Entity #23: Chains: W - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 49 358
95% 195 198 44
90% 195 198 46
70% 195 198 58
50% 195 198 91
40% 195 198 113
30% 195 198 137
Entity #24: Chains: X - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 186 189 32
95% 186 189 52
90% 186 189 55
70% 186 189 67
50% 186 189 112
40% 186 189 135
30% 186 189 153
Entity #3: Chains: D - tRNA(Phe) rna, length: 74 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: 1 - MESSENGER RNA MK27 rna, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 196 199 23
95% 197 200 35
90% 197 200 38
70% 197 200 48
50% 197 200 88
40% 273 276 53
30% 273 276 75
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 170 173 48
95% 170 173 72
90% 170 173 76
70% 170 173 91
50% 211 214 76
40% 211 214 102
30% 211 214 122
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 8 6973
95% 197 200 36
90% 197 200 39
70% 197 200 49
50% 273 276 40
40% 274 277 51
30% 274 277 74
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 196 199 24
95% 196 199 39
90% 196 199 41
70% 196 199 52
50% 274 280 37
40% 274 280 48
30% 276 282 72
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 199 204 17
95% 205 210 29
90% 205 210 31
70% 205 210 42
50% 205 210 82
40% 205 210 107
30% 243 248 87
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.