1JGO

The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY


Sequence Similarity Clusters for the Entities in PDB 1JGO

Entity #1 | Chains: A
30S 16S ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 267 273 27
95 % 268 274 39
90 % 268 274 43
70 % 268 274 54
50 % 332 338 68
40 % 335 341 78
30 % 335 341 91
Entity #11 | Chains: K
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 263 269 32
95 % 263 269 44
90 % 267 273 44
70 % 267 273 55
50 % 391 397 26
40 % 395 401 35
30 % 500 506 29
Entity #12 | Chains: L
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 91 207
95 % 266 269 49
90 % 266 269 52
70 % 266 269 63
50 % 388 391 34
40 % 388 391 45
30 % 491 494 35
Entity #13 | Chains: M
30S RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 264 267 37
95 % 265 268 52
90 % 265 268 55
70 % 265 268 67
50 % 394 397 25
40 % 394 397 36
30 % 493 496 31
Entity #14 | Chains: N
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 266 269 35
95 % 266 269 48
90 % 266 269 51
70 % 266 269 62
50 % 388 391 33
40 % 490 493 18
30 % 490 493 33
Entity #15 | Chains: O
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 214 217 48
95 % 273 276 37
90 % 273 276 41
70 % 401 404 20
50 % 406 409 23
40 % 406 409 33
30 % 406 409 55
Entity #16 | Chains: P
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 267 270 33
95 % 267 270 45
90 % 267 270 49
70 % 267 270 59
50 % 393 396 31
40 % 393 396 44
30 % 494 497 34
Entity #17 | Chains: Q
30S RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 265 268 36
95 % 265 268 53
90 % 265 268 56
70 % 267 270 60
50 % 267 270 89
40 % 267 270 111
30 % 267 270 123
Entity #18 | Chains: R
30S RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 267 272 29
95 % 272 277 36
90 % 272 277 40
70 % 272 277 51
50 % 398 404 24
40 % 401 407 34
30 % 401 407 56
Entity #19 | Chains: S
30S RIBOSOMAL PROTEIN S16 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 14999
95 % 265 269 50
90 % 265 269 53
70 % 265 269 64
50 % 267 271 88
40 % 267 271 109
30 % 388 392 64
Entity #2 | Chains: B,C
tRNA(Phe) rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: T
30S RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 84 87 242
95 % 260 263 54
90 % 264 267 57
70 % 264 267 68
50 % 264 267 93
40 % 264 267 114
30 % 264 267 127
Entity #21 | Chains: U
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 51 684
95 % 231 234 62
90 % 231 234 66
70 % 231 234 78
50 % 231 234 107
40 % 231 234 132
30 % 231 234 141
Entity #22 | Chains: V
30S RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 267 272 28
95 % 267 272 41
90 % 267 272 46
70 % 267 272 56
50 % 391 396 27
40 % 394 399 38
30 % 394 399 57
Entity #23 | Chains: W
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 51 480
95 % 265 268 51
90 % 265 268 54
70 % 265 268 66
50 % 265 268 91
40 % 265 268 112
30 % 265 268 124
Entity #24 | Chains: X
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 256 259 42
95 % 256 259 57
90 % 256 259 61
70 % 256 259 73
50 % 256 259 96
40 % 256 259 119
30 % 256 259 130
Entity #3 | Chains: D
tRNA(Phe) rna, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: 1
MESSENGER RNA MK27 rna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: E
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 266 269 31
95 % 267 270 42
90 % 267 270 47
70 % 267 270 57
50 % 387 390 32
40 % 390 393 43
30 % 390 393 61
Entity #6 | Chains: F
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 230 233 45
95 % 230 233 63
90 % 230 233 67
70 % 230 233 79
50 % 301 304 81
40 % 301 304 100
30 % 301 304 113
Entity #7 | Chains: G
30S RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 8570
95 % 267 270 43
90 % 267 270 48
70 % 267 270 58
50 % 389 392 30
40 % 392 395 41
30 % 392 395 60
Entity #8 | Chains: H
30S RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 266 269 34
95 % 266 269 47
90 % 266 269 50
70 % 266 269 61
50 % 390 396 29
40 % 390 396 42
30 % 392 398 59
Entity #9 | Chains: I
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 269 274 26
95 % 275 280 34
90 % 275 280 39
70 % 275 280 50
50 % 275 280 86
40 % 275 280 105
30 % 329 334 90

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.