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The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY
Sequence Clustering and Redundancy Reduction Results
1JGO
Sequence Clusters for the Sequence Entities in PDB 1JGO
Entity #1: Chains: A - 30S 16S ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 217 223 27
95% 218 224 40
90% 218 224 44
70% 218 224 55
50% 261 267 51
40% 262 268 64
30% 262 268 83
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 213 219 31
95% 213 219 44
90% 217 223 45
70% 217 223 56
50% 300 306 35
40% 302 308 43
30% 367 373 37
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 89 180
95% 216 219 48
90% 216 219 52
70% 216 219 63
50% 297 300 43
40% 297 300 52
30% 361 364 46
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 214 217 36
95% 215 218 51
90% 215 218 55
70% 215 218 67
50% 303 306 31
40% 303 306 42
30% 365 368 40
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 216 219 34
95% 216 219 47
90% 216 219 51
70% 216 219 62
50% 297 300 42
40% 366 369 30
30% 367 370 38
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 179 182 46
95% 223 226 39
90% 223 226 43
70% 308 311 22
50% 309 312 30
40% 309 312 41
30% 309 312 57
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 217 220 32
95% 217 220 45
90% 217 220 49
70% 217 220 60
50% 302 305 39
40% 302 305 50
30% 366 369 44
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 215 218 35
95% 215 218 52
90% 215 218 56
70% 216 219 65
50% 216 219 92
40% 216 219 114
30% 216 219 128
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 217 222 29
95% 222 227 36
90% 222 227 40
70% 222 227 52
50% 307 313 29
40% 308 314 39
30% 308 314 54
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S16 protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 5 12827
95% 215 219 49
90% 215 219 53
70% 215 219 64
50% 215 219 91
40% 216 220 113
30% 299 303 70
Entity #2: Chains: B,C - tRNA(Phe) rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 77 80 226
95% 210 213 56
90% 214 217 58
70% 214 217 69
50% 214 217 94
40% 214 217 116
30% 214 217 130
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 49 530
95% 191 194 64
90% 191 194 66
70% 191 194 79
50% 191 194 113
40% 191 194 131
30% 191 194 150
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 217 222 28
95% 217 222 41
90% 217 222 46
70% 217 222 57
50% 298 303 38
40% 298 303 48
30% 298 303 67
Entity #23: Chains: W - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 49 371
95% 215 218 50
90% 215 218 54
70% 215 218 66
50% 215 218 93
40% 215 218 115
30% 215 218 129
Entity #24: Chains: X - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 206 209 40
95% 206 209 59
90% 206 209 62
70% 206 209 73
50% 206 209 100
40% 206 209 123
30% 206 209 135
Entity #3: Chains: D - tRNA(Phe) rna, length: 74 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: 1 - MESSENGER RNA MK27 rna, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 216 219 30
95% 217 220 42
90% 217 220 47
70% 217 220 58
50% 296 299 41
40% 297 300 51
30% 297 300 69
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 190 193 45
95% 190 193 65
90% 190 193 67
70% 190 193 80
50% 234 237 77
40% 234 237 102
30% 234 237 121
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 8 7255
95% 217 220 43
90% 217 220 48
70% 217 220 59
50% 297 300 40
40% 298 301 49
30% 298 301 68
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 216 219 33
95% 216 219 46
90% 216 219 50
70% 216 219 61
50% 298 304 37
40% 298 304 47
30% 300 306 63
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 219 224 25
95% 225 230 24
90% 225 230 29
70% 225 230 41
50% 225 230 83
40% 225 230 108
30% 264 269 80
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.