1JGO

The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY


Sequence Similarity Clusters for the Entities in PDB 1JGO

Entity #1 | Chains: A
30S 16S ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 269 275 28
95 % 270 276 41
90 % 270 276 46
70 % 270 276 56
50 % 349 355 67
40 % 354 360 84
30 % 354 360 95
Entity #11 | Chains: K
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 265 271 32
95 % 265 271 45
90 % 269 275 47
70 % 269 275 57
50 % 414 420 27
40 % 420 426 37
30 % 535 541 30
Entity #12 | Chains: L
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 91 217
95 % 268 271 50
90 % 268 271 55
70 % 268 271 65
50 % 408 411 35
40 % 408 411 48
30 % 520 523 35
Entity #13 | Chains: M
30S RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 266 269 39
95 % 267 270 53
90 % 267 270 58
70 % 267 270 68
50 % 417 420 26
40 % 417 420 38
30 % 524 527 32
Entity #14 | Chains: N
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 268 271 35
95 % 268 271 49
90 % 268 271 54
70 % 268 271 64
50 % 411 414 32
40 % 533 536 19
30 % 533 536 31
Entity #15 | Chains: O
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 214 217 51
95 % 275 278 39
90 % 275 278 44
70 % 418 421 19
50 % 428 431 24
40 % 428 431 36
30 % 428 431 55
Entity #16 | Chains: P
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 269 272 33
95 % 269 272 46
90 % 269 272 51
70 % 269 272 62
50 % 415 418 31
40 % 415 418 45
30 % 523 526 34
Entity #17 | Chains: Q
30S RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 267 270 36
95 % 267 270 54
90 % 267 270 59
70 % 275 278 54
50 % 275 278 91
40 % 275 278 114
30 % 275 278 123
Entity #18 | Chains: R
30S RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 269 274 30
95 % 274 279 38
90 % 274 279 43
70 % 274 279 53
50 % 421 427 25
40 % 426 432 34
30 % 426 432 54
Entity #19 | Chains: S
30S RIBOSOMAL PROTEIN S16 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 15760
95 % 267 271 51
90 % 267 271 56
70 % 267 271 66
50 % 274 278 90
40 % 274 278 113
30 % 409 413 63
Entity #2 | Chains: B,C
tRNA(Phe) rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: T
30S RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 84 87 255
95 % 262 265 56
90 % 266 269 60
70 % 266 269 69
50 % 266 269 94
40 % 266 269 117
30 % 266 269 128
Entity #21 | Chains: U
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 51 719
95 % 233 236 65
90 % 233 236 69
70 % 233 236 81
50 % 233 236 111
40 % 233 236 135
30 % 233 236 144
Entity #22 | Chains: V
30S RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 269 274 29
95 % 269 274 42
90 % 269 274 48
70 % 269 274 58
50 % 415 420 28
40 % 418 423 40
30 % 418 423 56
Entity #23 | Chains: W
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 51 524
95 % 267 270 52
90 % 267 270 57
70 % 267 270 67
50 % 267 270 93
40 % 267 270 116
30 % 267 270 127
Entity #24 | Chains: X
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 258 261 43
95 % 258 261 59
90 % 258 261 63
70 % 258 261 74
50 % 258 261 98
40 % 258 261 121
30 % 258 261 133
Entity #3 | Chains: D
tRNA(Phe) rna, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: 1
MESSENGER RNA MK27 rna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: E
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 268 271 31
95 % 269 272 43
90 % 269 272 49
70 % 269 272 59
50 % 406 409 36
40 % 411 414 44
30 % 411 414 62
Entity #6 | Chains: F
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 232 235 48
95 % 232 235 66
90 % 232 235 70
70 % 232 235 82
50 % 306 309 83
40 % 306 309 102
30 % 306 309 116
Entity #7 | Chains: G
30S RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 9000
95 % 269 272 44
90 % 269 272 50
70 % 269 272 60
50 % 412 415 30
40 % 417 420 41
30 % 417 420 57
Entity #8 | Chains: H
30S RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 268 271 34
95 % 268 271 48
90 % 268 271 53
70 % 268 271 63
50 % 411 417 29
40 % 411 417 42
30 % 413 419 59
Entity #9 | Chains: I
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 271 276 27
95 % 277 282 37
90 % 277 282 42
70 % 277 282 51
50 % 277 282 88
40 % 277 282 110
30 % 349 354 93

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.