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The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY
Sequence Clustering and Redundancy Reduction Results
1JGO
Sequence Clusters for the Sequence Entities in PDB 1JGO
Entity #1: Chains: A - 30S 16S ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 197 203 19
95% 198 204 33
90% 198 204 35
70% 198 204 44
50% 241 247 56
40% 242 248 71
30% 242 248 95
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 193 199 22
95% 193 199 37
90% 197 203 36
70% 197 203 45
50% 277 283 36
40% 279 285 46
30% 333 339 44
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 87 90 159
95% 196 199 41
90% 196 199 43
70% 196 199 55
50% 274 277 42
40% 274 277 54
30% 327 330 50
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 194 197 29
95% 195 198 46
90% 195 198 48
70% 195 198 61
50% 280 283 35
40% 280 283 45
30% 331 334 46
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 196 199 26
95% 196 199 40
90% 196 199 42
70% 196 199 54
50% 274 277 41
40% 332 335 35
30% 333 336 45
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 163 166 36
95% 203 206 32
90% 203 206 34
70% 285 288 24
50% 286 289 34
40% 286 289 44
30% 286 289 69
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 197 200 23
95% 197 200 38
90% 197 200 40
70% 197 200 51
50% 279 282 39
40% 279 282 50
30% 332 335 49
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 195 198 27
95% 195 198 47
90% 195 198 49
70% 196 199 57
50% 196 199 90
40% 196 199 113
30% 196 199 137
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 197 202 21
95% 202 207 31
90% 202 207 33
70% 202 207 43
50% 284 290 33
40% 285 291 43
30% 285 291 67
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S16 protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 5 12397
95% 195 199 42
90% 195 199 44
70% 195 199 56
50% 195 199 89
40% 196 200 112
30% 276 280 76
Entity #2: Chains: B,C - tRNA(Phe) rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 77 80 223
95% 190 193 50
90% 194 197 50
70% 194 197 62
50% 194 197 94
40% 194 197 117
30% 194 197 139
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 49 513
95% 171 174 72
90% 171 174 76
70% 171 174 90
50% 171 174 131
40% 171 174 149
30% 171 174 164
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 197 202 20
95% 197 202 34
90% 197 202 37
70% 197 202 47
50% 275 280 38
40% 275 280 49
30% 275 280 73
Entity #23: Chains: W - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 49 360
95% 195 198 45
90% 195 198 47
70% 195 198 60
50% 195 198 93
40% 195 198 115
30% 195 198 138
Entity #24: Chains: X - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 186 189 32
95% 186 189 52
90% 186 189 55
70% 186 189 68
50% 186 189 112
40% 186 189 135
30% 186 189 153
Entity #3: Chains: D - tRNA(Phe) rna, length: 74 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: 1 - MESSENGER RNA MK27 rna, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 196 199 24
95% 197 200 35
90% 197 200 38
70% 197 200 48
50% 273 276 43
40% 274 277 52
30% 274 277 75
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 170 173 48
95% 170 173 73
90% 170 173 77
70% 170 173 92
50% 211 214 78
40% 211 214 102
30% 211 214 123
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 8 7001
95% 197 200 36
90% 197 200 39
70% 197 200 49
50% 274 277 40
40% 275 278 51
30% 275 278 74
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 196 199 25
95% 196 199 39
90% 196 199 41
70% 196 199 52
50% 275 281 37
40% 275 281 48
30% 277 283 72
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 199 204 18
95% 205 210 30
90% 205 210 32
70% 205 210 42
50% 205 210 83
40% 205 210 107
30% 244 249 87
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.