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The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY
Sequence Clustering and Redundancy Reduction Results
1JGO
Sequence Clusters for the Sequence Entities in PDB 1JGO
Entity #1: Chains: A - 30S 16S ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 204 210 16
95% 205 211 32
90% 205 211 35
70% 205 211 44
50% 248 254 51
40% 249 255 67
30% 249 255 88
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 200 206 19
95% 200 206 38
90% 204 210 36
70% 204 210 45
50% 284 290 36
40% 286 292 46
30% 340 347 44
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 87 90 160
95% 203 206 42
90% 203 206 44
70% 203 206 53
50% 281 284 42
40% 281 284 52
30% 334 338 49
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 201 204 25
95% 202 205 45
90% 202 205 47
70% 202 205 57
50% 287 290 35
40% 287 290 45
30% 338 342 46
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 203 206 23
95% 203 206 41
90% 203 206 43
70% 203 206 52
50% 281 284 41
40% 339 343 34
30% 340 344 45
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 169 172 33
95% 210 213 31
90% 210 213 34
70% 292 295 24
50% 293 296 34
40% 293 296 44
30% 293 296 67
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 204 207 20
95% 204 207 39
90% 204 207 41
70% 204 207 50
50% 286 289 39
40% 286 289 49
30% 339 343 48
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 202 205 24
95% 202 205 46
90% 202 205 48
70% 203 206 55
50% 203 206 85
40% 203 206 110
30% 203 206 129
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 204 209 18
95% 209 214 29
90% 209 214 32
70% 209 214 42
50% 291 297 33
40% 292 298 43
30% 292 298 65
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S16 protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 5 12433
95% 202 206 43
90% 202 206 45
70% 202 206 54
50% 202 206 84
40% 203 207 109
30% 283 287 74
Entity #2: Chains: B,C - tRNA(Phe) rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 77 80 223
95% 197 200 47
90% 201 204 49
70% 201 204 58
50% 201 204 87
40% 201 204 112
30% 201 204 131
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 49 515
95% 177 180 55
90% 177 180 57
70% 177 180 72
50% 177 180 119
40% 177 180 143
30% 177 180 159
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 204 209 17
95% 204 209 33
90% 204 209 37
70% 204 209 46
50% 282 287 38
40% 282 287 48
30% 282 287 71
Entity #23: Chains: W - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 49 361
95% 202 205 44
90% 202 205 46
70% 202 205 56
50% 202 205 86
40% 202 205 111
30% 202 205 130
Entity #24: Chains: X - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 193 196 32
95% 193 196 51
90% 193 196 53
70% 193 196 64
50% 193 196 97
40% 193 196 120
30% 193 196 143
Entity #3: Chains: D - tRNA(Phe) rna, length: 74 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: 1 - MESSENGER RNA MK27 rna, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 203 206 21
95% 204 207 35
90% 204 207 38
70% 204 207 47
50% 280 283 43
40% 281 284 51
30% 281 284 73
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 176 179 36
95% 176 179 56
90% 176 179 59
70% 176 179 73
50% 217 220 77
40% 217 220 100
30% 217 220 120
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 8 7027
95% 204 207 37
90% 204 207 40
70% 204 207 49
50% 281 284 40
40% 282 285 50
30% 282 285 72
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 203 206 22
95% 203 206 40
90% 203 206 42
70% 203 206 51
50% 282 288 37
40% 282 288 47
30% 284 290 69
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 206 211 15
95% 212 217 28
90% 212 217 31
70% 212 217 41
50% 212 217 78
40% 212 217 102
30% 251 256 85
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.