1JGO

The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY


Sequence Similarity Clusters for the Entities in PDB 1JGO

Entity #1 | Chains: A
30S 16S ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 267 273 28
95 % 268 274 41
90 % 268 274 45
70 % 268 274 56
50 % 332 338 71
40 % 335 341 79
30 % 335 341 93
Entity #11 | Chains: K
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 263 269 33
95 % 263 269 46
90 % 267 273 46
70 % 267 273 57
50 % 393 399 29
40 % 397 403 38
30 % 506 512 30
Entity #12 | Chains: L
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 91 211
95 % 266 269 51
90 % 266 269 54
70 % 266 269 65
50 % 390 393 36
40 % 390 393 47
30 % 496 499 35
Entity #13 | Chains: M
30S RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 264 267 39
95 % 265 268 54
90 % 265 268 57
70 % 265 268 69
50 % 397 400 26
40 % 397 400 37
30 % 497 500 32
Entity #14 | Chains: N
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 266 269 36
95 % 266 269 50
90 % 266 269 53
70 % 266 269 64
50 % 390 393 35
40 % 496 499 19
30 % 496 499 33
Entity #15 | Chains: O
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 214 217 50
95 % 273 276 40
90 % 273 276 44
70 % 403 406 22
50 % 408 411 25
40 % 408 411 35
30 % 408 411 55
Entity #16 | Chains: P
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 267 270 34
95 % 267 270 47
90 % 267 270 51
70 % 267 270 61
50 % 395 398 33
40 % 395 398 46
30 % 497 500 36
Entity #17 | Chains: Q
30S RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 265 268 38
95 % 265 268 55
90 % 265 268 58
70 % 267 270 62
50 % 267 270 90
40 % 267 270 112
30 % 267 270 124
Entity #18 | Chains: R
30S RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 267 272 30
95 % 272 277 39
90 % 272 277 43
70 % 272 277 55
50 % 400 406 27
40 % 403 409 36
30 % 403 409 56
Entity #19 | Chains: S
30S RIBOSOMAL PROTEIN S16 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 15134
95 % 265 269 52
90 % 265 269 55
70 % 265 269 66
50 % 267 271 89
40 % 267 271 110
30 % 390 394 63
Entity #2 | Chains: B,C
tRNA(Phe) rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: T
30S RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 84 87 246
95 % 260 263 57
90 % 264 267 59
70 % 264 267 70
50 % 264 267 94
40 % 264 267 115
30 % 264 267 127
Entity #21 | Chains: U
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 51 692
95 % 231 234 64
90 % 231 234 68
70 % 231 234 80
50 % 231 234 108
40 % 231 234 133
30 % 231 234 142
Entity #22 | Chains: V
30S RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 267 272 29
95 % 267 272 43
90 % 267 272 48
70 % 267 272 58
50 % 393 398 30
40 % 396 401 40
30 % 396 401 58
Entity #23 | Chains: W
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 51 488
95 % 265 268 53
90 % 265 268 56
70 % 265 268 68
50 % 265 268 92
40 % 265 268 113
30 % 265 268 125
Entity #24 | Chains: X
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 256 259 43
95 % 256 259 59
90 % 256 259 63
70 % 256 259 75
50 % 256 259 97
40 % 256 259 120
30 % 256 259 130
Entity #3 | Chains: D
tRNA(Phe) rna, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: 1
MESSENGER RNA MK27 rna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: E
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 266 269 32
95 % 267 270 44
90 % 267 270 49
70 % 267 270 59
50 % 389 392 34
40 % 392 395 45
30 % 392 395 62
Entity #6 | Chains: F
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 230 233 47
95 % 230 233 65
90 % 230 233 69
70 % 230 233 81
50 % 303 306 83
40 % 303 306 102
30 % 303 306 113
Entity #7 | Chains: G
30S RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 8648
95 % 267 270 45
90 % 267 270 50
70 % 267 270 60
50 % 391 394 32
40 % 394 397 42
30 % 394 397 61
Entity #8 | Chains: H
30S RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 266 269 35
95 % 266 269 49
90 % 266 269 52
70 % 266 269 63
50 % 392 398 31
40 % 392 398 43
30 % 394 400 59
Entity #9 | Chains: I
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 269 274 27
95 % 275 280 36
90 % 275 280 41
70 % 275 280 52
50 % 275 280 87
40 % 275 280 106
30 % 329 334 90

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.