Sequence Similarity Clusters for the Entities in PDB 1JGL

Entity #1 | Chains: L
Ig kappa-chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 39971
95 % 4 26 1016 Flexibility: Low
Max RMSD: 5.1, Avg RMSD: 2.0
PDBFlex
90 % 8 37 757
70 % 684 2265 1
50 % 1405 4589 1
40 % 1405 4589 1
30 % 1570 5394 1
Entity #2 | Chains: H
Ig gamma-1-chain protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 39593
95 % 1 2 30260 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 2 29087
70 % 678 2223 2
50 % 1406 4589 1
40 % 1406 4589 1
30 % 1571 5394 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.