Sequence Similarity Clusters for the Entities in PDB 1JGJ

Entity #1 | Chains: A
SENSORY RHODOPSIN II protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 54929
95 % 12 15 4172 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 12 15 4220
70 % 12 15 4144
50 % 12 15 4019
40 % 12 15 3803
30 % 148 194 193

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures