Sequence Similarity Clusters for the Entities in PDB 1JGJ

Entity #1 | Chains: A
SENSORY RHODOPSIN II protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60296
95 % 12 15 4108 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 12 15 4138
70 % 12 15 4078
50 % 12 15 3940
40 % 12 15 3765
30 % 148 194 174

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.