Sequence Similarity Clusters for the Entities in PDB 1JGG

Entity #1 | Chains: C
5'-D(P*TP*AP*AP*TP*TP*GP*AP*AP*TP*T)-3' dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
5'-D(P*AP*AP*TP*TP*CP*AP*AP*TP*TP*A)-3' dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B
Segmentation Protein Even-Skipped protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 34375
95 % 1 1 29480
90 % 1 1 28296
70 % 1 1 25473
50 % 10 35 811
40 % 12 77 481
30 % 12 92 429

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures