Sequence Similarity Clusters for the Entities in PDB 1JGG

Entity #1 | Chains: C
5'-D(P*TP*AP*AP*TP*TP*GP*AP*AP*TP*T)-3' dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
5'-D(P*AP*AP*TP*TP*CP*AP*AP*TP*TP*A)-3' dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B
Segmentation Protein Even-Skipped protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48338
95 % 1 1 36110 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 1 34502
70 % 1 1 30704
50 % 10 34 800
40 % 11 77 449
30 % 11 94 380

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.