Sequence Similarity Clusters for the Entities in PDB 1JGD

Entity #1 | Chains: A
HUMAN LYMPHOCYTE ANTIGEN HLA-B27 protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 10 5902
95 % 17 34 1559 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 82 204 136
70 % 170 732 6
50 % 170 737 7
40 % 175 788 10
30 % 188 919 15
Entity #2 | Chains: B
BETA-2-MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 165 632 2
95 % 185 676 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 186 685 4
70 % 206 936 4
50 % 211 958 3
40 % 211 958 7
30 % 211 958 12
Entity #3 | Chains: C
peptide s10R protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures