Sequence Similarity Clusters for the Entities in PDB 1JGD

Entity #1 | Chains: A
HUMAN LYMPHOCYTE ANTIGEN HLA-B27 protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 10 5620
95 % 17 34 1492 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 79 200 132
70 % 164 705 6
50 % 164 710 6
40 % 169 761 10
30 % 180 881 15
Entity #2 | Chains: B
BETA-2-MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 158 607 2
95 % 178 651 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 179 660 4
70 % 199 898 4
50 % 204 920 3
40 % 204 920 8
30 % 204 920 12
Entity #3 | Chains: C
peptide s10R protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.