Sequence Similarity Clusters for the Entities in PDB 1JFQ

Entity #1 | Chains: L
ANTIGEN-BINDING FRAGMENT OF ANTI-PHENYLARSONATE ANTIBODY protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 39263
95 % 8 52 538 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.9
PDBFlex
90 % 9 66 367
70 % 294 1822 2
50 % 726 4489 1
40 % 726 4489 1
30 % 785 5290 1
Entity #2 | Chains: H
ANTIGEN-BINDING FRAGMENT OF ANTI-PHENYLARSONATE ANTIBODY protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 57786
95 % 1 8 6110 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.0
PDBFlex
90 % 1 8 6096
70 % 355 2172 1
50 % 727 4489 1
40 % 727 4489 1
30 % 786 5290 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.