Sequence Similarity Clusters for the Entities in PDB 1JFQ

Entity #1 | Chains: L
ANTIGEN-BINDING FRAGMENT OF ANTI-PHENYLARSONATE ANTIBODY protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 40451
95 % 8 53 563 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.9
PDBFlex
90 % 9 67 370
70 % 365 2287 1
50 % 746 4633 1
40 % 746 4633 1
30 % 811 5461 1
Entity #2 | Chains: H
ANTIGEN-BINDING FRAGMENT OF ANTI-PHENYLARSONATE ANTIBODY protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59401
95 % 1 8 6327 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.1
PDBFlex
90 % 1 8 6311
70 % 365 2244 2
50 % 747 4633 1
40 % 747 4633 1
30 % 812 5461 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.