Sequence Similarity Clusters for the Entities in PDB 1JFQ

Entity #1 | Chains: L
ANTIGEN-BINDING FRAGMENT OF ANTI-PHENYLARSONATE ANTIBODY protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 44485
95 % 8 54 583 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.9
PDBFlex
90 % 9 68 401
70 % 418 2519 1
50 % 854 5107 1
40 % 1039 5756 1
30 % 1270 7175 1
Entity #2 | Chains: H
ANTIGEN-BINDING FRAGMENT OF ANTI-PHENYLARSONATE ANTIBODY protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 39811
95 % 1 9 5633 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.0
PDBFlex
90 % 1 9 5656
70 % 418 2478 2
50 % 855 5107 1
40 % 1040 5756 1
30 % 1271 7175 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures