Sequence Similarity Clusters for the Entities in PDB 1JFQ

Entity #1 | Chains: L
ANTIGEN-BINDING FRAGMENT OF ANTI-PHENYLARSONATE ANTIBODY protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 39867
95 % 8 53 550 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.9
PDBFlex
90 % 9 67 364
70 % 363 2265 1
50 % 742 4589 1
40 % 742 4589 1
30 % 801 5394 1
Entity #2 | Chains: H
ANTIGEN-BINDING FRAGMENT OF ANTI-PHENYLARSONATE ANTIBODY protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58629
95 % 1 8 6252 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.0
PDBFlex
90 % 1 8 6236
70 % 363 2223 2
50 % 743 4589 1
40 % 743 4589 1
30 % 802 5394 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.