Sequence Similarity Clusters for the Entities in PDB 1JFM

Entity #1 | Chains: A,B,C,D,E
retinoic acid early transcript beta protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 11565
95 % 2 2 11161 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.6
PDBFlex
90 % 2 2 11006
70 % 2 2 10404
50 % 2 2 9367
40 % 2 2 8466
30 % 2 2 7325

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures