Sequence Similarity Clusters for the Entities in PDB 1JFM

Entity #1 | Chains: A,B,C,D,E
retinoic acid early transcript beta protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 11006
95 % 2 2 10991 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.6
PDBFlex
90 % 2 2 10843
70 % 2 2 10293
50 % 2 2 9323
40 % 2 2 8526
30 % 2 2 7507

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures