Sequence Similarity Clusters for the Entities in PDB 1JFI

Entity #1 | Chains: D
5'-D(*TP*TP*GP*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*GP*GP*CP*TP*CP*C)-3' dna, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: E
5'-D(*G*GP*AP*GP*CP*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*CP*CP*AP*A)-3' dna, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
Transcription Regulator NC2 alpha chain protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48217
95 % 1 1 39999
90 % 1 1 38111
70 % 1 1 33724
50 % 1 1 28649
40 % 1 1 25109
30 % 1 1 20912
Entity #4 | Chains: B
Transcription Regulator NC2 beta chain protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48218
95 % 1 1 40000
90 % 1 1 38112
70 % 1 1 33725
50 % 1 1 28650
40 % 1 1 28581
30 % 1 1 20913
Entity #5 | Chains: C
TATA-BOX-BINDING PROTEIN (TBP) protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 5116
95 % 8 9 5080 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 8 9 5108
70 % 29 37 873
50 % 30 38 914
40 % 34 42 851
30 % 35 43 809

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures