Sequence Similarity Clusters for the Entities in PDB 1JFI

Entity #1 | Chains: D
5'-D(*TP*TP*GP*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*GP*GP*CP*TP*CP*C)-3' dna, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: E
5'-D(*G*GP*AP*GP*CP*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*CP*CP*AP*A)-3' dna, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
Transcription Regulator NC2 alpha chain protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 67449
95 % 1 1 46505
90 % 1 1 44166
70 % 1 1 38861
50 % 1 1 33216
40 % 1 1 29315
30 % 1 1 24748
Entity #4 | Chains: B
Transcription Regulator NC2 beta chain protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60466
95 % 1 1 42102
90 % 1 1 40034
70 % 1 1 35302
50 % 1 1 30128
40 % 1 1 26594
30 % 1 1 22541
Entity #5 | Chains: C
TATA-BOX-BINDING PROTEIN (TBP) protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 4123
95 % 8 9 4586 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 8 9 4602
70 % 27 33 918
50 % 29 37 867
40 % 33 41 798
30 % 34 42 733

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.