Sequence Similarity Clusters for the Entities in PDB 1JFI

Entity #1 | Chains: D
5'-D(*TP*TP*GP*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*GP*GP*CP*TP*CP*C)-3' dna, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: E
5'-D(*G*GP*AP*GP*CP*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*CP*CP*AP*A)-3' dna, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
Transcription Regulator NC2 alpha chain protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66617
95 % 1 1 45911
90 % 1 1 43621
70 % 1 1 38418
50 % 1 1 32877
40 % 1 1 29017
30 % 1 1 24505
Entity #4 | Chains: B
Transcription Regulator NC2 beta chain protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59650
95 % 1 1 41506
90 % 1 1 39487
70 % 1 1 34862
50 % 1 1 29794
40 % 1 1 26301
30 % 1 1 22298
Entity #5 | Chains: C
TATA-BOX-BINDING PROTEIN (TBP) protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 7 5425
95 % 7 8 5546
90 % 7 8 5550
70 % 26 32 953
50 % 26 32 987
40 % 30 36 915
30 % 33 41 747

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.