Sequence Similarity Clusters for the Entities in PDB 1JFI

Entity #1 | Chains: D
5'-D(*TP*TP*GP*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*GP*GP*CP*TP*CP*C)-3' dna, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: E
5'-D(*G*GP*AP*GP*CP*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*CP*CP*AP*A)-3' dna, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
Transcription Regulator NC2 alpha chain protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72053
95 % 1 1 49656
90 % 1 1 47032
70 % 1 1 41187
50 % 1 1 35088
40 % 1 1 30933
30 % 1 1 26118
Entity #4 | Chains: B
Transcription Regulator NC2 beta chain protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64673
95 % 1 1 44996
90 % 1 1 42664
70 % 1 1 37482
50 % 1 1 31898
40 % 1 1 28135
30 % 1 1 23844
Entity #5 | Chains: C
TATA-BOX-BINDING PROTEIN (TBP) protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 4548
95 % 8 9 5011 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 8 9 5036
70 % 27 33 991
50 % 29 37 919
40 % 33 41 862
30 % 34 42 809

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures