Sequence Similarity Clusters for the Entities in PDB 1JFI

Entity #1 | Chains: D
5'-D(*TP*TP*GP*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*GP*GP*CP*TP*CP*C)-3' dna, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: E
5'-D(*G*GP*AP*GP*CP*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*CP*CP*AP*A)-3' dna, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
Transcription Regulator NC2 alpha chain protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71164
95 % 1 1 49074
90 % 1 1 46500
70 % 1 1 40737
50 % 1 1 34714
40 % 1 1 30597
30 % 1 1 25832
Entity #4 | Chains: B
Transcription Regulator NC2 beta chain protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63845
95 % 1 1 44451
90 % 1 1 42168
70 % 1 1 37060
50 % 1 1 31550
40 % 1 1 27821
30 % 1 1 23579
Entity #5 | Chains: C
TATA-BOX-BINDING PROTEIN (TBP) protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 4463
95 % 8 9 4932 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 8 9 4951
70 % 27 33 978
50 % 29 37 911
40 % 33 41 853
30 % 34 42 793

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures