Sequence Similarity Clusters for the Entities in PDB 1JEW

Entity #1 | Chains: R
COXSACKIEVIRUS AND ADENOVIRUS RECEPTOR protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 13 1116
95 % 13 13 1507
90 % 13 13 1537
70 % 13 13 1544
50 % 13 13 1602
40 % 13 13 1610
30 % 13 13 1591
Entity #2 | Chains: 1
COXSACKIEVIRUS CAPSID, COAT PROTEIN VP1 protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 27753
95 % 4 4 18095
90 % 4 4 17727
70 % 6 6 11579
50 % 14 14 4609
40 % 129 160 281
30 % 129 160 295
Entity #3 | Chains: 2
COXSACKIEVIRUS CAPSID, COAT PROTEIN VP2 protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 27992
95 % 4 4 18333
90 % 4 4 17957
70 % 15 15 4526
50 % 129 160 339
40 % 129 160 354
30 % 161 195 169
Entity #4 | Chains: 3
COXSACKIEVIRUS CAPSID, COAT PROTEIN VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 28330
95 % 4 4 18701
90 % 4 4 18304
70 % 15 15 4536
50 % 138 169 251
40 % 140 171 263
30 % 176 210 153
Entity #5 | Chains: 4
COXSACKIEVIRUS CAPSID, COAT PROTEIN VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 30999
95 % 8 8 10333
90 % 12 12 6379
70 % 60 87 592
50 % 94 122 453
40 % 95 123 479
30 % 95 123 472

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures