Sequence Similarity Clusters for the Entities in PDB 1JEW

Entity #1 | Chains: R
COXSACKIEVIRUS AND ADENOVIRUS RECEPTOR protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 13 1090
95 % 13 13 1471
90 % 13 13 1503
70 % 13 13 1507
50 % 13 13 1560
40 % 13 13 1578
30 % 13 13 1553
Entity #2 | Chains: 1
COXSACKIEVIRUS CAPSID, COAT PROTEIN VP1 protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 27149
95 % 4 4 17699
90 % 4 4 17347
70 % 6 6 11327
50 % 14 14 4509
40 % 129 160 277
30 % 129 160 287
Entity #3 | Chains: 2
COXSACKIEVIRUS CAPSID, COAT PROTEIN VP2 protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 27385
95 % 4 4 17936
90 % 4 4 17577
70 % 15 15 4418
50 % 129 160 315
40 % 129 160 329
30 % 161 195 167
Entity #4 | Chains: 3
COXSACKIEVIRUS CAPSID, COAT PROTEIN VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 27717
95 % 4 4 18296
90 % 4 4 17919
70 % 15 15 4429
50 % 138 169 244
40 % 140 171 260
30 % 176 210 149
Entity #5 | Chains: 4
COXSACKIEVIRUS CAPSID, COAT PROTEIN VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 30353
95 % 8 8 10093
90 % 12 12 6238
70 % 60 87 576
50 % 94 122 441
40 % 95 123 466
30 % 95 123 462

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures