Sequence Similarity Clusters for the Entities in PDB 1JEK

Entity #1 | Chains: A
ENV POLYPROTEIN protein, length: 42 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 65473
95 % 1 1 53060
90 % 1 1 50301
70 % 1 1 44000
50 % 1 1 37313
40 % 1 1 32646
30 % 1 1 27302
Entity #2 | Chains: B
ENV POLYPROTEIN protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 65471
95 % 1 1 53058
90 % 1 1 50300
70 % 1 1 43999
50 % 1 1 37312
40 % 1 1 32645
30 % 1 1 27301

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures