Sequence Similarity Clusters for the Entities in PDB 1JEB

Entity #1 | Chains: A,C
HEMOGLOBIN ZETA CHAIN protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 15776
95 % 2 2 14767 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 2 2 14494
70 % 2 2 13610
50 % 468 744 4
40 % 473 749 8
30 % 896 1200 8
Entity #2 | Chains: B,D
HEMOGLOBIN BETA-SINGLE CHAIN protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44424
95 % 1 2 19661 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.7
PDBFlex
90 % 1 4 10559
70 % 213 341 13
50 % 469 744 4
40 % 474 749 8
30 % 897 1200 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.