Sequence Similarity Clusters for the Entities in PDB 1JEB

Entity #1 | Chains: A,C
HEMOGLOBIN ZETA CHAIN protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 16104
95 % 2 2 15030 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 2 2 14757
70 % 2 2 13844
50 % 476 754 4
40 % 481 759 8
30 % 912 1218 8
Entity #2 | Chains: B,D
HEMOGLOBIN BETA-SINGLE CHAIN protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 45215
95 % 1 2 20027 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.7
PDBFlex
90 % 1 4 10745
70 % 217 346 14
50 % 477 754 4
40 % 482 759 8
30 % 913 1218 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures