Sequence Similarity Clusters for the Entities in PDB 1JEB

Entity #1 | Chains: A,C
HEMOGLOBIN ZETA CHAIN protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 16356
95 % 2 2 15242 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 2 2 14960
70 % 2 2 14025
50 % 476 754 4
40 % 481 759 8
30 % 920 1226 8
Entity #2 | Chains: B,D
HEMOGLOBIN BETA-SINGLE CHAIN protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 45755
95 % 1 2 20295 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.7
PDBFlex
90 % 1 4 10913
70 % 217 346 14
50 % 477 754 4
40 % 482 759 8
30 % 921 1226 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures