Sequence Similarity Clusters for the Entities in PDB 1JDP

Entity #1 | Chains: A,B
ATRIAL NATRIURETIC PEPTIDE CLEARANCE RECEPTOR protein, length: 441 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 28266
95 % 1 4 11169 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.2
PDBFlex
90 % 1 4 11018
70 % 1 4 10413
50 % 1 4 9371
40 % 1 4 8474
30 % 1 4 7330
Entity #2 | Chains: H
C-TYPE NATRIURETIC PEPTIDE protein, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58891
95 % 1 1 48148
90 % 1 1 45731
70 % 1 1 40124
50 % 1 1 34038
40 % 1 1 29804
30 % 1 1 24884

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures