Sequence Similarity Clusters for the Entities in PDB 1JDP

Entity #1 | Chains: A,B
ATRIAL NATRIURETIC PEPTIDE CLEARANCE RECEPTOR protein, length: 441 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 26518
95 % 1 4 10508 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.2
PDBFlex
90 % 1 4 10380
70 % 1 4 9848
50 % 1 4 8915
40 % 1 4 8166
30 % 1 4 7212
Entity #2 | Chains: H
C-TYPE NATRIURETIC PEPTIDE protein, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 77307
95 % 1 1 53926
90 % 1 1 51091
70 % 1 1 44692
50 % 1 1 38143
40 % 1 1 33669
30 % 1 1 28608

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures