Sequence Similarity Clusters for the Entities in PDB 1JDP

Entity #1 | Chains: A,B
ATRIAL NATRIURETIC PEPTIDE CLEARANCE RECEPTOR protein, length: 441 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 26161
95 % 1 4 10351 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.2
PDBFlex
90 % 1 4 10226
70 % 1 4 9707
50 % 1 4 8790
40 % 1 4 8061
30 % 1 4 7119
Entity #2 | Chains: H
C-TYPE NATRIURETIC PEPTIDE protein, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 76452
95 % 1 1 53339
90 % 1 1 50554
70 % 1 1 44232
50 % 1 1 37753
40 % 1 1 33320
30 % 1 1 28308

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures