Sequence Similarity Clusters for the Entities in PDB 1JDP

Entity #1 | Chains: A,B
ATRIAL NATRIURETIC PEPTIDE CLEARANCE RECEPTOR protein, length: 441 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 25672
95 % 1 4 10184 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.2
PDBFlex
90 % 1 4 10058
70 % 1 4 9553
50 % 1 4 8654
40 % 1 4 7933
30 % 1 4 7013
Entity #2 | Chains: H
C-TYPE NATRIURETIC PEPTIDE protein, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 75376
95 % 1 1 52675
90 % 1 1 49951
70 % 1 1 43723
50 % 1 1 37334
40 % 1 1 32953
30 % 1 1 28005

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures