Sequence Similarity Clusters for the Entities in PDB 1JDJ

Entity #1 | Chains: A
GLYCEROL-3-PHOSPHATE DEHYDROGENASE protein, length: 366 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 9550
95 % 4 7 9408 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 4 7 9300
70 % 4 7 8903
50 % 4 7 8118
40 % 4 7 7425
30 % 6 9 4628

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures