Sequence Similarity Clusters for the Entities in PDB 1JDE

Entity #1 | Chains: A
PYRUVATE, PHOSPHATE DIKINASE protein, length: 873 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 15739
95 % 6 7 10807 Flexibility: Medium
Max RMSD: 11.8, Avg RMSD: 4.4
PDBFlex
90 % 6 7 10654
70 % 6 7 10070
50 % 9 14 3335
40 % 9 14 3219
30 % 9 14 2981

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures