Sequence Similarity Clusters for the Entities in PDB 1JDB

Entity #1 | Chains: B,E,H,K
CARBAMOYL PHOSPHATE SYNTHETASE protein, length: 1073 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 1509
95 % 5 10 1305 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 5 10 1330
70 % 5 10 1351
50 % 5 10 1399
40 % 5 10 1409
30 % 5 10 1387
Entity #2 | Chains: C,F,I,L
CARBAMOYL PHOSPHATE SYNTHETASE protein, length: 382 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 4749
95 % 5 10 1324 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 5 10 1348
70 % 5 10 1364
50 % 5 10 1418
40 % 5 10 1430
30 % 5 10 1402

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures