Sequence Similarity Clusters for the Entities in PDB 1JDB

Entity #1 | Chains: B,E,H,K
CARBAMOYL PHOSPHATE SYNTHETASE protein, length: 1073 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 1423
95 % 5 10 1256 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 5 10 1282
70 % 5 10 1306
50 % 5 10 1349
40 % 5 10 1366
30 % 5 10 1346
Entity #2 | Chains: C,F,I,L
CARBAMOYL PHOSPHATE SYNTHETASE protein, length: 382 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 4475
95 % 5 10 1274 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 5 10 1299
70 % 5 10 1319
50 % 5 10 1366
40 % 5 10 1389
30 % 5 10 1360

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.