Sequence Similarity Clusters for the Entities in PDB 1JDB

Entity #1 | Chains: B,E,H,K
CARBAMOYL PHOSPHATE SYNTHETASE protein, length: 1073 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 1480
95 % 5 10 1287 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 5 10 1313
70 % 5 10 1333
50 % 5 10 1382
40 % 5 10 1394
30 % 5 10 1377
Entity #2 | Chains: C,F,I,L
CARBAMOYL PHOSPHATE SYNTHETASE protein, length: 382 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 4666
95 % 5 10 1307 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 5 10 1332
70 % 5 10 1348
50 % 5 10 1399
40 % 5 10 1415
30 % 5 10 1391

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.