Sequence Similarity Clusters for the Entities in PDB 1JD9

Entity #1 | Chains: A
ALPHA-AMYLASE protein, length: 453 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 16142
95 % 9 9 8388 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.4
PDBFlex
90 % 9 9 8320
70 % 9 9 8010
50 % 9 9 7354
40 % 84 92 590
30 % 84 92 587

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures