Sequence Similarity Clusters for the Entities in PDB 1JD2

Entity #1 | Chains: A,V
PROTEASOME COMPONENT Y7 protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 235 243 13
95 % 235 243 21
90 % 235 243 22
70 % 235 243 32
50 % 252 270 40
40 % 1015 1097 3
30 % 1768 1908 3
Entity #10 | Chains: J,Q
PROTEASOME COMPONENT C11 protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 234 242 16
95 % 234 242 26
90 % 234 242 27
70 % 234 242 37
50 % 234 242 66
40 % 251 269 53
30 % 251 269 68
Entity #11 | Chains: K,R
PROTEASOME COMPONENT PRE2 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 132 132 78
95 % 195 197 53
90 % 195 197 57
70 % 246 249 25
50 % 246 250 51
40 % 246 250 58
30 % 516 536 13
Entity #12 | Chains: L,S
PROTEASOME COMPONENT C5 protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 203 211 23
95 % 235 243 22
90 % 235 243 23
70 % 235 243 33
50 % 235 243 65
40 % 252 269 52
30 % 252 270 66
Entity #13 | Chains: M,T
PROTEASOME COMPONENT PRE4 protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 235 243 8
95 % 235 243 15
90 % 235 243 17
70 % 235 243 27
50 % 235 243 64
40 % 252 261 55
30 % 252 261 71
Entity #14 | Chains: N,U
PROTEASOME COMPONENT PRE3 protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 235 243 14
95 % 235 243 24
90 % 235 243 25
70 % 235 243 35
50 % 252 261 47
40 % 252 261 56
30 % 517 536 13
Entity #15 | Chains: 8,9
TMC-95A inhibitor protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B,W
PROTEASOME COMPONENT Y13 protein, length: 244 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 235 243 10
95 % 235 243 18
90 % 235 243 19
70 % 235 243 29
50 % 252 270 39
40 % 1016 1097 3
30 % 1769 1908 3
Entity #3 | Chains: C,X
PROTEASOME COMPONENT PRE6 protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 235 243 11
95 % 235 243 19
90 % 235 243 20
70 % 235 243 30
50 % 252 269 42
40 % 1017 1097 3
30 % 1770 1908 3
Entity #4 | Chains: D,Y
PROTEASOME COMPONENT PUP2 protein, length: 242 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 235 243 9
95 % 235 243 16
90 % 236 244 16
70 % 236 244 26
50 % 253 271 37
40 % 1018 1097 3
30 % 1771 1908 3
Entity #5 | Chains: E,Z
PROTEASOME COMPONENT PRE5 protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 233 241 17
95 % 235 243 23
90 % 235 243 24
70 % 235 243 34
50 % 252 269 41
40 % 252 269 51
30 % 1772 1908 3
Entity #6 | Chains: 1,F
PROTEASOME COMPONENT C1 protein, length: 244 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 36 340
95 % 36 36 503
90 % 36 36 534
70 % 36 36 574
50 % 53 63 299
40 % 53 63 323
30 % 1773 1908 3
Entity #7 | Chains: 2,G
PROTEASOME COMPONENT C7-ALPHA protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 235 243 12
95 % 235 243 20
90 % 235 243 21
70 % 235 243 31
50 % 252 269 43
40 % 252 270 48
30 % 1774 1908 3
Entity #8 | Chains: H,O
PROTEASOME COMPONENT PUP1 protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 212 214 22
95 % 235 243 17
90 % 235 243 18
70 % 235 243 28
50 % 252 270 38
40 % 252 270 47
30 % 252 270 65
Entity #9 | Chains: I,P
PROTEASOME COMPONENT PUP3 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 235 243 15
95 % 235 243 25
90 % 235 243 26
70 % 235 243 36
50 % 252 269 44
40 % 252 270 49
30 % 252 270 67

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.