Sequence Similarity Clusters for the Entities in PDB 1JCR

Entity #1 | Chains: A
PROTEIN FARNESYLTRANSFERASE, ALPHA SUBUNIT protein, length: 377 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 34 364
95 % 1 42 425 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 9 56 377
70 % 9 56 412
50 % 9 56 495
40 % 9 56 533
30 % 9 56 531
Entity #2 | Chains: B
PROTEIN FARNESYLTRANSFERASE, BETA SUBUNIT protein, length: 437 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 41 941
95 % 9 56 892 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.7
PDBFlex
90 % 9 56 929
70 % 9 56 963
50 % 9 56 1012
40 % 9 56 1032
30 % 9 56 1011
Entity #3 | Chains: C
SYNTHETIC TETRAPEPTIDE CVFM protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.