Sequence Similarity Clusters for the Entities in PDB 1JCQ

Entity #1 | Chains: A
PROTEIN FARNESYLTRANSFERASE, ALPHA SUBUNIT protein, length: 382 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 14 3750
95 % 12 14 4520 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 27 56 369
70 % 27 56 404
50 % 27 56 481
40 % 27 56 516
30 % 27 56 515
Entity #2 | Chains: B
PROTEIN FARNESYLTRANSFERASE, BETA SUBUNIT protein, length: 437 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 11 5464
95 % 28 56 878 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.7
PDBFlex
90 % 28 56 912
70 % 28 56 944
50 % 28 56 993
40 % 28 56 1014
30 % 28 56 990

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.