Sequence Similarity Clusters for the Entities in PDB 1JCK

Entity #1 | Chains: A,C
14.3.D T CELL ANTIGEN RECEPTOR protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 7046
95 % 10 11 3050 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.6
PDBFlex
90 % 15 16 1893
70 % 284 297 45
50 % 287 300 77
40 % 287 300 95
30 % 4901 5394 1
Entity #2 | Chains: B,D
STAPHYLOCOCCAL ENTEROTOXIN C3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 26666
95 % 29 29 1341 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 1.0
PDBFlex
90 % 29 29 1363
70 % 29 29 1380
50 % 54 56 486
40 % 57 59 472
30 % 85 88 319

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.