Sequence Similarity Clusters for the Entities in PDB 1JCH

Entity #1 | Chains: A,C
COLICIN E3 protein, length: 551 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 33628
95 % 2 2 20852 Flexibility: Medium
Max RMSD: 6.7, Avg RMSD: 4.5
PDBFlex
90 % 2 2 21241
70 % 2 2 19447
50 % 2 2 16803
40 % 2 2 14848
30 % 2 2 12433
Entity #2 | Chains: B,D
COLICIN E3 IMMUNITY PROTEIN protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 9106
95 % 5 5 9057 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 5 5 8963
70 % 5 5 8617
50 % 5 5 7869
40 % 5 5 7211
30 % 5 5 6282

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures