Sequence Similarity Clusters for the Entities in PDB 1JCH

Entity #1 | Chains: A,C
COLICIN E3 protein, length: 551 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 31994
95 % 2 2 15805 Flexibility: Medium
Max RMSD: 6.7, Avg RMSD: 4.5
PDBFlex
90 % 2 2 15515
70 % 2 2 14554
50 % 2 2 12899
40 % 2 2 11673
30 % 2 2 10152
Entity #2 | Chains: B,D
COLICIN E3 IMMUNITY PROTEIN protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 10002
95 % 5 5 10049 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 5 5 9926
70 % 5 5 9434
50 % 5 5 8537
40 % 5 5 7819
30 % 5 5 6889

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures