Sequence Similarity Clusters for the Entities in PDB 1JCH

Entity #1 | Chains: A,C
COLICIN E3 protein, length: 551 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 32626
95 % 2 2 16132 Flexibility: Medium
Max RMSD: 6.7, Avg RMSD: 4.5
PDBFlex
90 % 2 2 15829
70 % 2 2 14837
50 % 2 2 13137
40 % 2 2 11880
30 % 2 2 10331
Entity #2 | Chains: B,D
COLICIN E3 IMMUNITY PROTEIN protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 10261
95 % 5 5 10271 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 5 5 10145
70 % 5 5 9632
50 % 5 5 8712
40 % 5 5 7978
30 % 5 5 7028

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures