Sequence Similarity Clusters for the Entities in PDB 1JCH

Entity #1 | Chains: A,C
COLICIN E3 protein, length: 551 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 30565
95 % 2 2 15113 Flexibility: Medium
Max RMSD: 6.7, Avg RMSD: 4.5
PDBFlex
90 % 2 2 14826
70 % 2 2 13898
50 % 2 2 12349
40 % 2 2 11181
30 % 2 2 9713
Entity #2 | Chains: B,D
COLICIN E3 IMMUNITY PROTEIN protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 9580
95 % 5 5 9632 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 5 5 9521
70 % 5 5 9049
50 % 5 5 8187
40 % 5 5 7508
30 % 5 5 6618

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.