Sequence Similarity Clusters for the Entities in PDB 1JCH

Entity #1 | Chains: A,C
COLICIN E3 protein, length: 551 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 31527
95 % 2 2 15575 Flexibility: Medium
Max RMSD: 6.7, Avg RMSD: 4.5
PDBFlex
90 % 2 2 15282
70 % 2 2 14327
50 % 2 2 12706
40 % 2 2 11506
30 % 2 2 10005
Entity #2 | Chains: B,D
COLICIN E3 IMMUNITY PROTEIN protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 9852
95 % 5 5 9924 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 5 5 9804
70 % 5 5 9318
50 % 5 5 8426
40 % 5 5 7718
30 % 5 5 6806

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.