Sequence Similarity Clusters for the Entities in PDB 1JCD

Entity #1 | Chains: A,B,C
MAJOR OUTER MEMBRANE LIPOPROTEIN protein, length: 52 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 29450
95 % 1 1 25724 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 1 5 7870
70 % 1 8 3363
50 % 1 8 3285
40 % 1 8 3173
30 % 1 8 2924

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures