Sequence Similarity Clusters for the Entities in PDB 1JCC

Entity #1 | Chains: A,B,C
MAJOR OUTER MEMBRANE LIPOPROTEIN protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 31064
95 % 1 1 25708 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.6
PDBFlex
90 % 2 5 8330
70 % 4 8 3362
50 % 4 8 3276
40 % 4 8 3187
30 % 4 8 2985

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures