Sequence Similarity Clusters for the Entities in PDB 1JBU

Entity #1 | Chains: H
COAGULATION FACTOR VII protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 97 349
95 % 58 101 419 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.6
PDBFlex
90 % 58 101 456
70 % 58 101 488
50 % 58 101 538
40 % 1265 1884 4
30 % 1272 1898 7
Entity #2 | Chains: L
COAGULATION FACTOR VII protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 31 34 1472
95 % 31 34 1741 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.3
PDBFlex
90 % 31 34 1780
70 % 31 34 1792
50 % 31 34 1816
40 % 31 34 1802
30 % 97 153 389
Entity #3 | Chains: X
Peptide exosite inhibitor A-183 protein, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures