Sequence Similarity Clusters for the Entities in PDB 1JBU

Entity #1 | Chains: H
COAGULATION FACTOR VII protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 97 322
95 % 58 101 415 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 0.7
PDBFlex
90 % 58 101 450
70 % 58 101 483
50 % 58 101 528
40 % 1258 1864 4
30 % 1266 1886 6
Entity #2 | Chains: L
COAGULATION FACTOR VII protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 31 34 1268
95 % 31 34 1717 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.8
PDBFlex
90 % 31 34 1759
70 % 31 34 1769
50 % 31 34 1800
40 % 31 34 1799
30 % 31 34 1757
Entity #3 | Chains: X
Peptide exosite inhibitor A-183 protein, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures