Sequence Similarity Clusters for the Entities in PDB 1JBT

Entity #1 | Chains: C,D
29-MER SARCIN/RICIN DOMAIN RNA ANALOG rna, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
RESTRICTOCIN protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 14049
95 % 4 4 9963 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.8
PDBFlex
90 % 4 4 9849
70 % 4 6 7228
50 % 4 6 6673
40 % 4 6 6215
30 % 4 6 5574

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures