Sequence Similarity Clusters for the Entities in PDB 1JBT

Entity #1 | Chains: C,D
29-MER SARCIN/RICIN DOMAIN RNA ANALOG rna, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
RESTRICTOCIN protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 13835
95 % 4 4 9816 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.8
PDBFlex
90 % 4 4 9705
70 % 4 6 7136
50 % 4 6 6584
40 % 4 6 6136
30 % 4 6 5497

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures