Sequence Similarity Clusters for the Entities in PDB 1JBS

Entity #1 | Chains: C,D
29-mer sarcin/ricin domain RNA analog rna, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
restrictocin protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 13585
95 % 2 4 9666 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.8
PDBFlex
90 % 2 4 9556
70 % 2 6 7024
50 % 2 6 6483
40 % 2 6 6042
30 % 2 6 5410

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures