Sequence Similarity Clusters for the Entities in PDB 1JBS

Entity #1 | Chains: C,D
29-mer sarcin/ricin domain RNA analog rna, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
restrictocin protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 13191
95 % 2 4 9421 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 2 4 9323
70 % 2 6 6798
50 % 2 6 6286
40 % 2 6 5857
30 % 2 6 5254

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.