Sequence Similarity Clusters for the Entities in PDB 1JBP

Entity #1 | Chains: E
CAMP-DEPENDENT PROTEIN KINASE, ALPHA-CATALYTIC SUBUNIT protein, length: 350 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 54037
95 % 104 192 137 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 0.9
PDBFlex
90 % 104 193 146
70 % 104 193 166
50 % 104 193 195
40 % 104 193 212
30 % 1523 3825 2
Entity #2 | Chains: S
CAMP-DEPENDENT PROTEIN KINASE INHIBITOR, MUSCLE/BRAIN FORM protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 24 2018
95 % 22 26 2278 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.5
PDBFlex
90 % 93 147 230
70 % 93 147 261
50 % 93 147 285
40 % 93 147 303
30 % 93 147 314

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.