Sequence Similarity Clusters for the Entities in PDB 1JBP

Entity #1 | Chains: E
CAMP-DEPENDENT PROTEIN KINASE, ALPHA-CATALYTIC SUBUNIT protein, length: 350 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 67 514
95 % 150 240 128 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 0.9
PDBFlex
90 % 150 241 131
70 % 150 241 151
50 % 150 241 180
40 % 182 327 138
30 % 1762 4287 2
Entity #2 | Chains: S
CAMP-DEPENDENT PROTEIN KINASE INHIBITOR, MUSCLE/BRAIN FORM protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 99 153 180
95 % 99 153 228 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 99 153 237
70 % 99 153 268
50 % 99 153 296
40 % 99 153 326
30 % 99 153 334

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures