Sequence Similarity Clusters for the Entities in PDB 1JBO

Entity #1 | Chains: A
C-Phycocyanin alpha chain protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 18 3320
95 % 2 18 3628 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 2 18 3698
70 % 2 36 297
50 % 2 42 301
40 % 4 54 85
30 % 10 143 15
Entity #2 | Chains: B
C-Phycocyanin beta chain protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 18 3294
95 % 2 18 3594
90 % 2 18 3667
70 % 2 39 296
50 % 7 62 40
40 % 7 87 34
30 % 11 143 15

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures