Sequence Similarity Clusters for the Entities in PDB 1JBO

Entity #1 | Chains: A
C-Phycocyanin alpha chain protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 7520
95 % 2 18 3696 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 2 18 3747
70 % 2 36 295
50 % 2 42 295
40 % 4 54 64
30 % 10 143 18
Entity #2 | Chains: B
C-Phycocyanin beta chain protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 18 2969
95 % 2 18 3681
90 % 2 18 3732
70 % 2 39 294
50 % 7 62 40
40 % 7 87 30
30 % 11 143 18

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures