Sequence Similarity Clusters for the Entities in PDB 1JBO

Entity #1 | Chains: A
C-Phycocyanin alpha chain protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 15480
95 % 2 14 4800 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 2 14 4819
70 % 2 31 378
50 % 2 37 409
40 % 4 48 253
30 % 10 128 115
Entity #2 | Chains: B
C-Phycocyanin beta chain protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 14 4004
95 % 2 14 4788 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.4
PDBFlex
90 % 2 14 4809
70 % 2 34 377
50 % 7 56 211
40 % 7 78 186
30 % 11 128 115

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.