Sequence Similarity Clusters for the Entities in PDB 1JB7

Entity #1 | Chains: D,G,H
5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3' dna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
telomere-binding protein alpha subunit protein, length: 495 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 15 3383
95 % 1 15 4152 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.4
PDBFlex
90 % 1 15 4181
70 % 1 15 4098
50 % 1 15 3966
40 % 1 15 3806
30 % 1 15 3523
Entity #3 | Chains: B
telomere-binding protein beta subunit protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 36807
95 % 1 2 28559 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 1 2 27580
70 % 1 2 24975
50 % 1 2 21429
40 % 1 2 18884
30 % 1 2 16021

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.