Sequence Similarity Clusters for the Entities in PDB 1JB7

Entity #1 | Chains: D,G,H
5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3' dna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
telomere-binding protein alpha subunit protein, length: 495 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 15 4410
95 % 1 15 4731 Flexibility: Low
Max RMSD: 12.1, Avg RMSD: 1.9
PDBFlex
90 % 1 15 4763
70 % 1 15 4644
50 % 1 15 4456
40 % 1 15 4205
30 % 1 15 3759
Entity #3 | Chains: B
telomere-binding protein beta subunit protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 37899
95 % 1 2 32166 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 1 2 30803
70 % 1 2 27575
50 % 1 2 23612
40 % 1 2 20794
30 % 1 2 17348

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures