Sequence Similarity Clusters for the Entities in PDB 1JB0

Entity #1 | Chains: A
PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A1 protein, length: 755 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 23800
95 % 1 3 20296
90 % 1 3 19742
70 % 1 14 3501
50 % 1 14 3414
40 % 1 28 1618
30 % 1 28 1582
Entity #10 | Chains: L
PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT XI protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 27331
95 % 1 3 22685
90 % 1 3 21962
70 % 1 4 11327
50 % 1 4 10145
40 % 1 4 9194
30 % 1 4 8002
Entity #11 | Chains: M
PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT XII protein, length: 31 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 28817
95 % 1 3 23887
90 % 1 3 23126
70 % 1 5 9725
50 % 1 5 8840
40 % 1 5 8094
30 % 1 5 7126
Entity #12 | Chains: X
PHOTOSYSTEM I SUBUNIT PSAX protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 47109
95 % 1 2 35231
90 % 1 2 33703
70 % 1 2 30091
50 % 1 2 25803
40 % 1 2 22818
30 % 1 2 19396
Entity #2 | Chains: B
PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A2 protein, length: 740 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 23808
95 % 1 3 20300
90 % 1 3 19745
70 % 1 14 3502
50 % 1 14 3415
40 % 2 28 1618
30 % 2 28 1582
Entity #3 | Chains: C
PHOTOSYSTEM I IRON-SULFUR CENTER protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 28411
95 % 1 6 9474
90 % 1 6 9358
70 % 1 15 3482
50 % 1 15 3391
40 % 1 15 3289
30 % 1 15 3068
Entity #4 | Chains: D
PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT II protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 27580
95 % 1 3 22876
90 % 1 3 22148
70 % 1 3 20286
50 % 1 11 4354
40 % 1 11 4150
30 % 1 11 3811
Entity #5 | Chains: E
PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT IV protein, length: 75 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 28461
95 % 1 3 23574
90 % 1 3 22834
70 % 1 8 6792
50 % 1 16 3132
40 % 1 16 3054
30 % 1 16 2868
Entity #6 | Chains: F
PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT III protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 27186
95 % 1 3 22586
90 % 1 3 21867
70 % 1 3 20045
50 % 1 4 14452
40 % 1 4 12871
30 % 1 4 11008
Entity #7 | Chains: I
PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT VIII protein, length: 38 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 28752
95 % 1 3 23836
90 % 1 3 23081
70 % 1 4 11926
50 % 1 4 10683
40 % 1 4 9696
30 % 1 4 8442
Entity #8 | Chains: J
PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT IX protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 28730
95 % 1 3 23815
90 % 1 3 23058
70 % 1 3 21105
50 % 1 13 4429
40 % 1 13 4222
30 % 1 13 3874
Entity #9 | Chains: K
PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT X protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 28386
95 % 1 3 23511
90 % 1 3 22775
70 % 1 3 20846
50 % 1 3 18084
40 % 1 3 16112
30 % 1 3 13796

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.