Sequence Similarity Clusters for the Entities in PDB 1JB0

Entity #1 | Chains: A
PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A1 protein, length: 755 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 25575
95 % 1 3 21756 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 3 21124
70 % 1 16 3103
50 % 1 16 3048
40 % 1 32 1435
30 % 1 32 1413
Entity #10 | Chains: L
PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT XI protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 29306
95 % 1 3 24296 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 1 3 23479
70 % 1 6 7779
50 % 1 6 7158
40 % 1 6 6650
30 % 1 6 5933
Entity #11 | Chains: M
PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT XII protein, length: 31 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 30894
95 % 1 3 25582 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 1 3 24719
70 % 1 6 7345
50 % 1 6 6765
40 % 1 6 6305
30 % 1 6 5641
Entity #12 | Chains: X
PHOTOSYSTEM I SUBUNIT PSAX protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 50218
95 % 1 2 37532
90 % 1 2 35816
70 % 1 2 31835
50 % 1 2 27211
40 % 1 2 24049
30 % 1 2 20446
Entity #2 | Chains: B
PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A2 protein, length: 740 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 25584
95 % 1 3 21762 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 3 21129
70 % 1 16 3104
50 % 1 16 3049
40 % 2 32 1435
30 % 2 32 1413
Entity #3 | Chains: C
PHOTOSYSTEM I IRON-SULFUR CENTER protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 30459
95 % 1 8 6654 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 8 6636
70 % 1 17 3080
50 % 1 17 3028
40 % 1 17 2976
30 % 1 17 2786
Entity #4 | Chains: D
PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT II protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 29569
95 % 1 3 24507 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 1 3 23685
70 % 1 3 21557
50 % 1 13 3766
40 % 1 13 3629
30 % 1 13 3394
Entity #5 | Chains: E
PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT IV protein, length: 75 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 30512
95 % 1 3 25245 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 3 24404
70 % 1 10 5291
50 % 1 18 2905
40 % 1 18 2854
30 % 1 18 2677
Entity #6 | Chains: F
PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT III protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 29146
95 % 1 3 24188 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 1 3 23374
70 % 1 3 21297
50 % 1 4 15360
40 % 1 4 13662
30 % 1 4 11694
Entity #7 | Chains: I
PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT VIII protein, length: 38 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 30821
95 % 1 3 25523 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 3 24668
70 % 1 6 7940
50 % 1 6 7318
40 % 1 6 6807
30 % 1 6 6071
Entity #8 | Chains: J
PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT IX protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 30800
95 % 1 3 25503 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 1 3 24646
70 % 1 3 22391
50 % 1 14 3807
40 % 1 14 3662
30 % 1 14 3428
Entity #9 | Chains: K
PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT X protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 30431
95 % 1 3 25177
90 % 1 3 24340
70 % 1 3 22121
50 % 1 6 11253
40 % 1 6 10201
30 % 1 6 8891

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures