Sequence Similarity Clusters for the Entities in PDB 1JB0

Entity #1 | Chains: A
PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A1 protein, length: 755 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 24988
95 % 1 3 21310 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 3 20715
70 % 1 14 3660
50 % 1 14 3560
40 % 1 28 1675
30 % 1 28 1641
Entity #10 | Chains: L
PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT XI protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 28675
95 % 1 3 23808 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 1 3 23027
70 % 1 4 11905
50 % 1 4 10614
40 % 1 4 9628
30 % 1 4 8394
Entity #11 | Chains: M
PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT XII protein, length: 31 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 30237
95 % 1 3 25074 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 1 3 24248
70 % 1 5 10221
50 % 1 5 9254
40 % 1 5 8478
30 % 1 5 7468
Entity #12 | Chains: X
PHOTOSYSTEM I SUBUNIT PSAX protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 49224
95 % 1 2 36832
90 % 1 2 35179
70 % 1 2 31305
50 % 1 2 26786
40 % 1 2 23678
30 % 1 2 20145
Entity #2 | Chains: B
PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A2 protein, length: 740 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 24996
95 % 1 3 21315 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 3 20719
70 % 1 14 3661
50 % 1 14 3561
40 % 2 28 1675
30 % 2 28 1641
Entity #3 | Chains: C
PHOTOSYSTEM I IRON-SULFUR CENTER protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 29804
95 % 1 6 9944 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 6 9823
70 % 1 15 3640
50 % 1 15 3536
40 % 1 15 3415
30 % 1 15 3189
Entity #4 | Chains: D
PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT II protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 28930
95 % 1 3 24010 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 1 3 23227
70 % 1 3 21160
50 % 1 11 4576
40 % 1 11 4347
30 % 1 11 3994
Entity #5 | Chains: E
PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT IV protein, length: 75 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 29856
95 % 1 3 24738 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 3 23935
70 % 1 8 7168
50 % 1 16 3279
40 % 1 16 3183
30 % 1 16 2991
Entity #6 | Chains: F
PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT III protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 28518
95 % 1 3 23701 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 1 3 22924
70 % 1 3 20906
50 % 1 4 15060
40 % 1 4 13407
30 % 1 4 11481
Entity #7 | Chains: I
PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT VIII protein, length: 38 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 30165
95 % 1 3 25016 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 3 24198
70 % 1 4 12532
50 % 1 4 11177
40 % 1 4 10145
30 % 1 4 8851
Entity #8 | Chains: J
PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT IX protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 30142
95 % 1 3 24994 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 1 3 24174
70 % 1 3 21996
50 % 1 13 4655
40 % 1 13 4420
30 % 1 13 4058
Entity #9 | Chains: K
PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT X protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 29778
95 % 1 3 24672
90 % 1 3 23873
70 % 1 3 21725
50 % 1 3 18788
40 % 1 3 16735
30 % 1 3 14335

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.