Sequence Similarity Clusters for the Entities in PDB 1JB0

Entity #1 | Chains: A
PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A1 protein, length: 755 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 23437
95 % 1 3 19980
90 % 1 3 19441
70 % 1 14 3455
50 % 1 14 3366
40 % 1 28 1602
30 % 1 28 1566
Entity #10 | Chains: L
PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT XI protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 26922
95 % 1 3 22341
90 % 1 3 21628
70 % 1 4 11143
50 % 1 4 9987
40 % 1 4 9054
30 % 1 4 7898
Entity #11 | Chains: M
PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT XII protein, length: 31 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 28388
95 % 1 3 23529
90 % 1 3 22779
70 % 1 5 9566
50 % 1 5 8706
40 % 1 5 7978
30 % 1 5 7039
Entity #12 | Chains: X
PHOTOSYSTEM I SUBUNIT PSAX protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 46397
95 % 1 2 34702
90 % 1 2 33208
70 % 1 2 29696
50 % 1 2 25491
40 % 1 2 22543
30 % 1 2 19170
Entity #2 | Chains: B
PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A2 protein, length: 740 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 23443
95 % 1 3 19983
90 % 1 3 19443
70 % 1 14 3456
50 % 1 14 3367
40 % 2 28 1602
30 % 2 28 1566
Entity #3 | Chains: C
PHOTOSYSTEM I IRON-SULFUR CENTER protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 27991
95 % 1 6 9300
90 % 1 6 9196
70 % 1 15 3437
50 % 1 15 3344
40 % 1 15 3238
30 % 1 15 3030
Entity #4 | Chains: D
PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT II protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 27166
95 % 1 3 22528
90 % 1 3 21811
70 % 1 3 19989
50 % 1 11 4303
40 % 1 11 4097
30 % 1 11 3770
Entity #5 | Chains: E
PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT IV protein, length: 75 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 28039
95 % 1 3 23219
90 % 1 3 22490
70 % 1 8 6670
50 % 1 16 3090
40 % 1 16 3008
30 % 1 16 2834
Entity #6 | Chains: F
PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT III protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 26777
95 % 1 3 22242
90 % 1 3 21533
70 % 1 3 19751
50 % 1 4 14243
40 % 1 4 12687
30 % 1 4 10867
Entity #7 | Chains: I
PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT VIII protein, length: 38 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 28323
95 % 1 3 23477
90 % 1 3 22734
70 % 1 4 11730
50 % 1 4 10516
40 % 1 4 9543
30 % 1 4 8330
Entity #8 | Chains: J
PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT IX protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 28302
95 % 1 3 23458
90 % 1 3 22713
70 % 1 3 20793
50 % 1 13 4377
40 % 1 13 4169
30 % 1 13 3834
Entity #9 | Chains: K
PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT X protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 27966
95 % 1 3 23159
90 % 1 3 22434
70 % 1 3 20539
50 % 1 3 17834
40 % 1 3 15889
30 % 1 3 13615

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.