Sequence Similarity Clusters for the Entities in PDB 1JB0

Entity #1 | Chains: A
PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A1 protein, length: 755 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 24648
95 % 1 3 21031
90 % 1 3 20440
70 % 1 14 3598
50 % 1 14 3512
40 % 1 28 1657
30 % 1 28 1624
Entity #10 | Chains: L
PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT XI protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 28269
95 % 1 3 23478
90 % 1 3 22715
70 % 1 4 11746
50 % 1 4 10481
40 % 1 4 9511
30 % 1 4 8284
Entity #11 | Chains: M
PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT XII protein, length: 31 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 29789
95 % 1 3 24712
90 % 1 3 23909
70 % 1 5 10101
50 % 1 5 9149
40 % 1 5 8382
30 % 1 5 7379
Entity #12 | Chains: X
PHOTOSYSTEM I SUBUNIT PSAX protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 48577
95 % 1 2 36355
90 % 1 2 34729
70 % 1 2 30932
50 % 1 2 26486
40 % 1 2 23413
30 % 1 2 19909
Entity #2 | Chains: B
PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A2 protein, length: 740 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 24656
95 % 1 3 21036
90 % 1 3 20444
70 % 1 14 3599
50 % 1 14 3513
40 % 2 28 1657
30 % 2 28 1624
Entity #3 | Chains: C
PHOTOSYSTEM I IRON-SULFUR CENTER protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 29368
95 % 1 6 9793
90 % 1 6 9683
70 % 1 15 3578
50 % 1 15 3488
40 % 1 15 3370
30 % 1 15 3146
Entity #4 | Chains: D
PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT II protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 28520
95 % 1 3 23672
90 % 1 3 22905
70 % 1 3 20886
50 % 1 11 4516
40 % 1 11 4287
30 % 1 11 3942
Entity #5 | Chains: E
PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT IV protein, length: 75 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 29419
95 % 1 3 24387
90 % 1 3 23606
70 % 1 8 7061
50 % 1 16 3226
40 % 1 16 3137
30 % 1 16 2948
Entity #6 | Chains: F
PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT III protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 28118
95 % 1 3 23371
90 % 1 3 22612
70 % 1 3 20634
50 % 1 4 14875
40 % 1 4 13247
30 % 1 4 11334
Entity #7 | Chains: I
PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT VIII protein, length: 38 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 29718
95 % 1 3 24655
90 % 1 3 23859
70 % 1 4 12372
50 % 1 4 11042
40 % 1 4 10026
30 % 1 4 8740
Entity #8 | Chains: J
PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT IX protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 29695
95 % 1 3 24633
90 % 1 3 23835
70 % 1 3 21722
50 % 1 13 4594
40 % 1 13 4361
30 % 1 13 4007
Entity #9 | Chains: K
PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT X protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 29341
95 % 1 3 24321
90 % 1 3 23545
70 % 1 3 21454
50 % 1 3 18573
40 % 1 3 16543
30 % 1 3 14165

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.