Sequence Similarity Clusters for the Entities in PDB 1JB0

Entity #1 | Chains: A
PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A1 protein, length: 755 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 7149
95 % 1 4 7731 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 4 7677
70 % 1 19 2156
50 % 1 19 2158
40 % 1 38 1059
30 % 1 38 1045
Entity #10 | Chains: L
PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT XI protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 7644
95 % 1 4 8203 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 1 4 8144
70 % 1 7 4582
50 % 1 9 3818
40 % 1 15 2618
30 % 1 15 2476
Entity #11 | Chains: M
PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT XII protein, length: 31 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 7848
95 % 1 4 8409 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 1 4 8355
70 % 1 7 4391
50 % 1 7 4212
40 % 1 7 4022
30 % 1 7 3729
Entity #12 | Chains: X
PHOTOSYSTEM I SUBUNIT PSAX protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 10372
95 % 1 3 10379
90 % 1 3 10251
70 % 1 3 9726
50 % 1 3 8803
40 % 1 3 8064
30 % 1 3 7116
Entity #2 | Chains: B
PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A2 protein, length: 740 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 7151
95 % 1 4 7733 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 4 7679
70 % 1 19 2157
50 % 1 19 2159
40 % 2 38 1059
30 % 2 38 1045
Entity #3 | Chains: C
PHOTOSYSTEM I IRON-SULFUR CENTER protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 7803
95 % 1 9 3966 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 11 3534
70 % 1 20 2144
50 % 1 20 2147
40 % 1 20 2149
30 % 1 20 2062
Entity #4 | Chains: D
PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT II protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 7673
95 % 1 4 8244 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 1 4 8182
70 % 1 4 7916
50 % 1 15 2688
40 % 1 15 2632
30 % 1 15 2487
Entity #5 | Chains: E
PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT IV protein, length: 75 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 7806
95 % 1 4 8369 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 4 8314
70 % 1 11 3500
50 % 1 19 2255
40 % 1 20 2151
30 % 1 20 2063
Entity #6 | Chains: F
PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT III protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 7628
95 % 1 4 8190 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 1 4 8132
70 % 1 4 7876
50 % 1 5 6650
40 % 1 5 6192
30 % 1 5 5549
Entity #7 | Chains: I
PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT VIII protein, length: 38 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 7840
95 % 1 4 8401 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 4 8345
70 % 1 7 4651
50 % 1 7 4454
40 % 1 7 4235
30 % 1 7 3909
Entity #8 | Chains: J
PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT IX protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 7835
95 % 1 4 8397 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 1 4 8342
70 % 1 4 8052
50 % 1 17 2521
40 % 1 17 2484
30 % 1 17 2367
Entity #9 | Chains: K
PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT X protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 7798
95 % 1 4 8360
90 % 1 4 8304
70 % 1 4 8017
50 % 1 7 5790
40 % 1 7 5436
30 % 1 7 4885

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures