Sequence Similarity Clusters for the Entities in PDB 1JAT

Entity #1 | Chains: A
Ubiquitin-Conjugating Enzyme E2-17.5 KDA protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 23442
95 % 1 5 13335 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.9
PDBFlex
90 % 1 5 13113
70 % 4 30 843
50 % 15 93 315
40 % 26 181 172
30 % 26 191 172
Entity #2 | Chains: B
Ubiquitin-Conjugating Enzyme Variant Mms2 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 29970
95 % 1 3 24836
90 % 1 3 23997
70 % 1 3 21824
50 % 4 17 1486
40 % 4 19 1404
30 % 4 19 1390

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures