Sequence Similarity Clusters for the Entities in PDB 1JAT

Entity #1 | Chains: A
Ubiquitin-Conjugating Enzyme E2-17.5 KDA protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 22504
95 % 1 5 12855 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.9
PDBFlex
90 % 1 5 12636
70 % 4 27 912
50 % 14 89 308
40 % 25 177 166
30 % 25 185 176
Entity #2 | Chains: B
Ubiquitin-Conjugating Enzyme Variant Mms2 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 28903
95 % 1 3 23986
90 % 1 3 23204
70 % 1 3 21138
50 % 4 17 1433
40 % 4 19 1365
30 % 4 19 1348

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.