Sequence Similarity Clusters for the Entities in PDB 1JAT

Entity #1 | Chains: A
Ubiquitin-Conjugating Enzyme E2-17.5 KDA protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 23071
95 % 1 5 13124 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.9
PDBFlex
90 % 1 5 12906
70 % 4 30 831
50 % 15 93 304
40 % 26 181 170
30 % 26 191 170
Entity #2 | Chains: B
Ubiquitin-Conjugating Enzyme Variant Mms2 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 29568
95 % 1 3 24506
90 % 1 3 23684
70 % 1 3 21556
50 % 4 17 1465
40 % 4 19 1394
30 % 4 19 1378

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures