Sequence Similarity Clusters for the Entities in PDB 1JAQ

Entity #1 | Chains: A
MATRIX METALLO PROTEINASE-8 (MET80 FORM) protein, length: 163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 24 1488
95 % 22 25 1914 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.6
PDBFlex
90 % 22 25 1957
70 % 22 25 1980
50 % 170 232 99
40 % 174 236 122
30 % 174 236 129

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.