Sequence Similarity Clusters for the Entities in PDB 1JAQ

Entity #1 | Chains: A
MATRIX METALLO PROTEINASE-8 (MET80 FORM) protein, length: 163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 24 1789
95 % 22 25 2023 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.6
PDBFlex
90 % 22 25 2069
70 % 22 25 2066
50 % 175 237 104
40 % 179 241 126
30 % 179 241 137

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures