Sequence Similarity Clusters for the Entities in PDB 1JAP

Entity #1 | Chains: A
MATRIX METALLO PROTEINASE-8 (MET80 FORM) protein, length: 163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 24 1303
95 % 11 25 1718
90 % 11 25 1756
70 % 11 25 1778
50 % 80 223 94
40 % 82 227 113
30 % 82 227 126
Entity #2 | Chains: I
PRO-LEU-GLY-HYDROXYLAMINE protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.