Sequence Similarity Clusters for the Entities in PDB 1JAO

Entity #1 | Chains: A
MATRIX METALLO PROTEINASE-8 (MET80 FORM) protein, length: 163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 24 1516
95 % 20 25 1961 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.6
PDBFlex
90 % 20 25 2006
70 % 20 25 2027
50 % 163 232 101
40 % 166 236 123
30 % 166 236 130

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures