Sequence Similarity Clusters for the Entities in PDB 1JAO

Entity #1 | Chains: A
MATRIX METALLO PROTEINASE-8 (MET80 FORM) protein, length: 163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 24 1490
95 % 20 25 1916 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.6
PDBFlex
90 % 20 25 1959
70 % 20 25 1982
50 % 163 232 99
40 % 166 236 122
30 % 166 236 129

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures