Sequence Similarity Clusters for the Entities in PDB 1JAN

Entity #1 | Chains: A
MATRIX METALLO PROTEINASE-8 (PHE79 FORM) protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 24 1774
95 % 21 25 2012 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.6
PDBFlex
90 % 21 25 2060
70 % 21 25 2053
50 % 173 237 104
40 % 177 241 126
30 % 177 241 139
Entity #2 | Chains: I
PRO-LEU-GLY-HYDROXYLAMINE INHIBITOR protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures