Sequence Similarity Clusters for the Entities in PDB 1JAC

Entity #1 | Chains: A,C,E,G
JACALIN protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 21 467
95 % 24 31 361 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 25 32 367
70 % 28 36 374
50 % 36 49 265
40 % 36 49 281
30 % 68 93 194
Entity #2 | Chains: B,D,F,H
JACALIN protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 24929
95 % 1 1 21277
90 % 8 14 1001
70 % 8 14 1037
50 % 8 14 1079
40 % 8 14 1088
30 % 8 14 1069

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures