Sequence Similarity Clusters for the Entities in PDB 1JAC

Entity #1 | Chains: A,C,E,G
JACALIN protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 21 456
95 % 24 31 346 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 25 32 354
70 % 28 36 358
50 % 36 49 259
40 % 36 49 273
30 % 65 90 195
Entity #2 | Chains: B,D,F,H
JACALIN protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 24247
95 % 1 1 20683
90 % 8 14 974
70 % 8 14 1005
50 % 8 14 1045
40 % 8 14 1057
30 % 8 14 1037

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.