Sequence Similarity Clusters for the Entities in PDB 1JAC

Entity #1 | Chains: A,C,E,G
JACALIN protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 21 437
95 % 24 31 344 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 25 32 355
70 % 28 36 356
50 % 33 46 279
40 % 33 46 296
30 % 62 87 200
Entity #2 | Chains: B,D,F,H
JACALIN protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 23920
95 % 1 1 20416
90 % 8 14 962
70 % 8 14 989
50 % 8 14 1030
40 % 8 14 1043
30 % 8 14 1020

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.