Sequence Similarity Clusters for the Entities in PDB 1J9C

Entity #1 | Chains: T
Tissue factor protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 39 923
95 % 38 40 1214 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.0
PDBFlex
90 % 38 40 1244
70 % 39 41 1215
50 % 39 41 1270
40 % 39 41 1285
30 % 39 41 1261
Entity #2 | Chains: L
factor VIIa light chain protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 13604
95 % 4 5 12929 Flexibility: Medium
Max RMSD: 11.7, Avg RMSD: 7.6
PDBFlex
90 % 4 5 12717
70 % 4 5 11936
50 % 4 5 10655
40 % 29 31 1454
30 % 29 31 1429
Entity #3 | Chains: H
factor VIIa heavy chain protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 96 97 264
95 % 100 101 355 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.7
PDBFlex
90 % 100 101 379
70 % 100 101 416
50 % 100 101 499
40 % 1615 1682 4
30 % 1751 1831 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.