Sequence Similarity Clusters for the Entities in PDB 1J9C

Entity #1 | Chains: T
Tissue factor protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 39 958
95 % 38 40 1249 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.0
PDBFlex
90 % 38 40 1279
70 % 39 41 1248
50 % 39 41 1305
40 % 39 41 1317
30 % 39 41 1289
Entity #2 | Chains: L
factor VIIa light chain protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 14008
95 % 4 5 13300 Flexibility: Medium
Max RMSD: 11.7, Avg RMSD: 6.3
PDBFlex
90 % 4 5 13080
70 % 4 5 12304
50 % 4 5 10971
40 % 29 31 1486
30 % 29 31 1457
Entity #3 | Chains: H
factor VIIa heavy chain protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 96 97 293
95 % 100 101 376 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 0.7
PDBFlex
90 % 100 101 404
70 % 100 101 438
50 % 100 101 509
40 % 1631 1698 4
30 % 1768 1848 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures