Sequence Similarity Clusters for the Entities in PDB 1J9C

Entity #1 | Chains: T
Tissue factor protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 39 911
95 % 38 40 1201 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.0
PDBFlex
90 % 38 40 1231
70 % 39 41 1203
50 % 39 41 1249
40 % 39 41 1268
30 % 39 41 1244
Entity #2 | Chains: L
factor VIIa light chain protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 13423
95 % 4 5 12759 Flexibility: Medium
Max RMSD: 11.7, Avg RMSD: 7.6
PDBFlex
90 % 4 5 12549
70 % 4 5 11792
50 % 4 5 10543
40 % 29 31 1440
30 % 29 31 1412
Entity #3 | Chains: H
factor VIIa heavy chain protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 96 97 260
95 % 100 101 352 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.7
PDBFlex
90 % 100 101 375
70 % 100 101 413
50 % 100 101 490
40 % 1607 1674 4
30 % 1742 1822 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.