Sequence Similarity Clusters for the Entities in PDB 1J9C

Entity #1 | Chains: T
Tissue factor protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 39 1124
95 % 38 40 1307 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.0
PDBFlex
90 % 38 40 1332
70 % 39 41 1296
50 % 39 41 1355
40 % 39 41 1348
30 % 39 41 1340
Entity #2 | Chains: L
factor VIIa light chain protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 13586
95 % 4 5 12830 Flexibility: Medium
Max RMSD: 11.7, Avg RMSD: 6.3
PDBFlex
90 % 4 5 12619
70 % 4 5 11882
50 % 4 5 10606
40 % 29 31 1524
30 % 29 31 1516
Entity #3 | Chains: H
factor VIIa heavy chain protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 96 97 349
95 % 100 101 419 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 0.7
PDBFlex
90 % 100 101 455
70 % 100 101 487
50 % 100 101 538
40 % 1791 1873 4
30 % 1802 1887 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures