Sequence Similarity Clusters for the Entities in PDB 1J8M

Entity #1 | Chains: F
SIGNAL RECOGNITION 54 KDA PROTEIN protein, length: 297 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 39786
95 % 1 2 33680 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 2 32205
70 % 2 4 9451
50 % 2 4 8592
40 % 2 4 7843
30 % 31 59 607

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1J8M 1 F SIGNAL RECOGNITION 54 KDA PROTEIN G-DOMAIN, GTPASE DOMAIN 2283
2 1J8Y 1 F SIGNAL RECOGNITION 54 KDA PROTEIN G-DOMAIN, GTPASE DOMAIN 2283