Sequence Similarity Clusters for the Entities in PDB 1J8H

Entity #1 | Chains: A
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 74 231
95 % 38 81 295 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 41 97 236
70 % 41 97 269
50 % 54 149 179
40 % 54 149 196
30 % 107 310 99
Entity #2 | Chains: B
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR-4 BETA CHAIN protein, length: 192 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 41999
95 % 13 18 3150 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.0
PDBFlex
90 % 36 76 339
70 % 52 140 163
50 % 54 149 178
40 % 54 149 195
30 % 108 310 99
Entity #3 | Chains: C
HEMAGGLUTININ HA1 PEPTIDE CHAIN protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
T-CELL RECEPTOR ALPHA CHAIN protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 41060
95 % 1 3 23184 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 1 3 22426
70 % 4 25 1300
50 % 97 303 79
40 % 97 303 95
30 % 2539 5567 1
Entity #5 | Chains: E
T-CELL RECEPTOR BETA CHAIN protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 38775
95 % 1 3 22718 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 3 7 7697
70 % 101 312 29
50 % 101 315 71
40 % 101 315 90
30 % 2540 5567 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.