Sequence Similarity Clusters for the Entities in PDB 1J8H

Entity #1 | Chains: A
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 69 236
95 % 35 76 310
90 % 38 92 238
70 % 38 92 273
50 % 51 144 180
40 % 51 144 195
30 % 101 300 91
Entity #2 | Chains: B
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR-4 BETA CHAIN protein, length: 192 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 39912
95 % 13 18 2985
90 % 34 73 337
70 % 49 135 166
50 % 51 144 179
40 % 51 144 194
30 % 102 300 91
Entity #3 | Chains: C
HEMAGGLUTININ HA1 PEPTIDE CHAIN protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
T-CELL RECEPTOR ALPHA CHAIN protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 39006
95 % 1 3 21956
90 % 1 3 21263
70 % 4 25 1244
50 % 94 285 82
40 % 94 285 101
30 % 2379 5151 1
Entity #5 | Chains: E
T-CELL RECEPTOR BETA CHAIN protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 36842
95 % 1 3 21503
90 % 3 7 7256
70 % 98 295 43
50 % 98 298 75
40 % 98 298 92
30 % 2380 5151 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.