Sequence Similarity Clusters for the Entities in PDB 1J8H

Entity #1 | Chains: A
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 69 224
95 % 35 76 299
90 % 38 92 229
70 % 38 92 263
50 % 50 142 177
40 % 50 142 191
30 % 99 296 99
Entity #2 | Chains: B
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR-4 BETA CHAIN protein, length: 192 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 39276
95 % 13 18 2935
90 % 34 73 326
70 % 48 133 164
50 % 50 142 176
40 % 50 142 190
30 % 100 296 99
Entity #3 | Chains: C
HEMAGGLUTININ HA1 PEPTIDE CHAIN protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
T-CELL RECEPTOR ALPHA CHAIN protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 38378
95 % 1 3 21637
90 % 1 3 20957
70 % 4 25 1215
50 % 92 280 80
40 % 92 280 97
30 % 2320 5034 1
Entity #5 | Chains: E
T-CELL RECEPTOR BETA CHAIN protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 36242
95 % 1 3 21191
90 % 3 7 7113
70 % 96 290 42
50 % 96 293 75
40 % 96 293 90
30 % 2321 5034 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.