Sequence Similarity Clusters for the Entities in PDB 1J8F

Entity #1 | Chains: A,B,C
SIRTUIN 2, ISOFORM 1 protein, length: 323 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 18 1309
95 % 12 23 1203 Flexibility: Low
Max RMSD: 9.5, Avg RMSD: 2.2
PDBFlex
90 % 12 23 1230
70 % 12 23 1256
50 % 15 52 510
40 % 20 65 466
30 % 37 118 243

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures