Sequence Similarity Clusters for the Entities in PDB 1J8D

Entity #1 | Chains: A,B,C,D
deoxy-D-mannose-octulosonate 8-phosphate phosphatase protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 3124
95 % 3 3 3868 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 3 3 3918
70 % 3 3 3863
50 % 3 3 3750
40 % 3 3 3613
30 % 3 3 3378

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures