Sequence Similarity Clusters for the Entities in PDB 1J8D

Entity #1 | Chains: A,B,C,D
deoxy-D-mannose-octulosonate 8-phosphate phosphatase protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 2924
95 % 3 3 3659 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 3 3 3705
70 % 3 3 3646
50 % 3 3 3565
40 % 3 3 3441
30 % 3 3 3215

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.