Sequence Similarity Clusters for the Entities in PDB 1J88

Entity #1 | Chains: A,B,C,D,E
HIGH AFFINITY IMMUNOGLOBULIN EPSILON RECEPTOR ALPHA-SUBUNIT protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 3032
95 % 3 8 3158 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 1.4
PDBFlex
90 % 3 8 3207
70 % 3 8 3173
50 % 3 8 3096
40 % 20 30 1328
30 % 20 30 1304

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.