Sequence Similarity Clusters for the Entities in PDB 1J7D

Entity #1 | Chains: A
MMS2 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 12 1314
95 % 6 12 1761 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.7
PDBFlex
90 % 6 13 1565
70 % 7 14 1488
50 % 9 17 1443
40 % 9 19 1373
30 % 9 19 1354
Entity #2 | Chains: B
UBIQUITIN-CONJUGATING ENZYME E2-17 KDA protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 14 995
95 % 7 25 857 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.0
PDBFlex
90 % 7 25 887
70 % 9 30 821
50 % 29 92 300
40 % 54 180 164
30 % 54 188 169

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures