Sequence Similarity Clusters for the Entities in PDB 1J7D

Entity #1 | Chains: A
MMS2 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 12 1269
95 % 6 12 1718 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.7
PDBFlex
90 % 6 13 1519
70 % 7 14 1450
50 % 9 17 1407
40 % 9 19 1341
30 % 9 19 1325
Entity #2 | Chains: B
UBIQUITIN-CONJUGATING ENZYME E2-17 KDA protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 14 956
95 % 7 22 934 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.0
PDBFlex
90 % 7 22 967
70 % 9 27 896
50 % 29 88 297
40 % 53 174 169
30 % 53 182 177

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.