Sequence Similarity Clusters for the Entities in PDB 1J7D

Entity #1 | Chains: A
MMS2 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 12 1285
95 % 6 12 1739 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.7
PDBFlex
90 % 6 13 1546
70 % 7 14 1467
50 % 9 17 1421
40 % 9 19 1354
30 % 9 19 1340
Entity #2 | Chains: B
UBIQUITIN-CONJUGATING ENZYME E2-17 KDA protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 14 966
95 % 7 22 941
90 % 7 22 976
70 % 9 27 904
50 % 29 88 304
40 % 54 176 166
30 % 54 184 176

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.