Sequence Similarity Clusters for the Entities in PDB 1J7D

Entity #1 | Chains: A
MMS2 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 12 1588
95 % 6 12 1871 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.7
PDBFlex
90 % 6 13 1643
70 % 7 14 1541
50 % 9 19 1402
40 % 9 19 1390
30 % 9 19 1389
Entity #2 | Chains: B
UBIQUITIN-CONJUGATING ENZYME E2-17 KDA protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 18 897
95 % 7 25 892 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.0
PDBFlex
90 % 7 25 923
70 % 9 30 848
50 % 30 93 315
40 % 54 178 181
30 % 55 192 185

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures